View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_4 (Length: 614)
Name: NF11276_low_4
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 177 - 614
Target Start/End: Original strand, 34948237 - 34948674
Alignment:
| Q |
177 |
aaataattatacaaacatcattacatcaagcattaaatgcacaacatagagacataaataaaaatagacttcttttttcatcaaaagaaaattatagatt |
276 |
Q |
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| T |
34948237 |
aaataattatacaaacatcattacatcaagcattaaatgcacaacatagagacataaataaaaatagacttcttttttcatcaaaagaaaattatagatt |
34948336 |
T |
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| Q |
277 |
cagcaaatgatgttatttaacaggttaagcaagcgtcatcttccattcttccttgcttgataacaagtttcgagttaaactaaagtgcataacattannn |
376 |
Q |
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| T |
34948337 |
cagcaaatgatgttatttaacaggttaagcaagcgtcatcttccattcttccttgcttgataacaagtttcaagttaaactaaagtgcataacattaggg |
34948436 |
T |
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| Q |
377 |
nnnnaagtatacattagatcaattgcaccttgcttgagaactccttcgtgcaaataccatcgttatcagctctaaaatgacggtttaccacatagctggc |
476 |
Q |
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| T |
34948437 |
ggggaagtatacattagatcaattgcaccttgcttgagaactccttcgtgcatataccattgttatcagctctaaaatgacggtttaccacatagctggc |
34948536 |
T |
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| Q |
477 |
agcatgatgattatcatttgcccccgaagtccagttcaggtatcgagacaaaacgtttattttgtatttgtcaaatgcattcctaggttctcttgtgctt |
576 |
Q |
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| T |
34948537 |
agcatgatgattatcatttgcccccgaagtccagttcaggtatcgagacaaaacatttattttgtatttgtcaaatgcattcctaagttctcttgtgctt |
34948636 |
T |
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| Q |
577 |
gtaatttccctggtgcattcatgatttagaaagtaaat |
614 |
Q |
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| T |
34948637 |
gtaatttccctggtgcattcatgatttggaaagtaaat |
34948674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 34947909 - 34948100
Alignment:
| Q |
1 |
gggaacaataaacttctcattttgcaatccatcccttgcaccaacctccactatctttacaaagtctggaatatttttacaaagctgaggcattgaatgt |
100 |
Q |
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| T |
34947909 |
gggaacaatagccttctcattttgcaatccatcccttgcaccaacctccactatctttacaaagtctggaatatttttacgaagctgaggcattgaatgt |
34948008 |
T |
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| Q |
101 |
aatattagtcataattctccaacaaaaggacggtccgattaaaagatgtcaatgaaacagggaaatgctcaattagaaataattatacaaac |
192 |
Q |
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| T |
34948009 |
aatattagtcataattctccaacaaaaggacggtccgattaaaagatgtcaatgaaacagggaaatgctcaattagaaataattatacaaac |
34948100 |
T |
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