View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_6 (Length: 548)
Name: NF11276_low_6
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 11733471 - 11732943
Alignment:
| Q |
1 |
caataacaagtggcagtccataatgttcaaggtaaatagtgacgtgagctttatcattcctttgggcagagaatccatacttctgcattcagaaagaacc |
100 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733471 |
caataacaaggggcagtccataatgatcaaggtaaatagtgacgtgagctttatcattcctttgggcagagaatccatacttctgcattcagaaagaacc |
11733372 |
T |
|
| Q |
101 |
agttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaatcataaatccttaaatctttcaatgatttcaagtttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733371 |
agttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaatcataaatccttaaatctttcaatgatttcaagtttccaa |
11733272 |
T |
|
| Q |
201 |
atccgcgtgtaagggtcactagttttggaatactccttaatgtaagagactcaagctttataagaccctcccaataatcgacttcaggtttttcgaggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11733271 |
atccgcgtgtaagggtcactagttttggaatactccttaaagtaagagactcaagctttacaagaccctcccaataatcgacttcaggtttttcgaggtg |
11733172 |
T |
|
| Q |
301 |
gaactcctgacatctctcaatacagagagactgtagtgaacagagagtcttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtgaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733171 |
gaactcctgacatctctcaatacagagagactgtagtgaacagagagtcttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtgaagt |
11733072 |
T |
|
| Q |
401 |
tctttaagggaagtgaagccttcaagccaattctgtggtggagattcttcaatacgctcgattaccatgaacttcaaattcaagagaggacttagtgaag |
500 |
Q |
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| T |
11733071 |
tctttaagggaagtgaagccttcaagccaattctgtggtggagattcttcaatacgctcgattaccatgaacttcaaattcaagagaggacttagtgaag |
11732972 |
T |
|
| Q |
501 |
cttctgcagtagtttcggtttcagttttg |
529 |
Q |
| |
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||||| | ||||||||||||||||||||| |
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| T |
11732971 |
cttctacggtagtttcggtttcagttttg |
11732943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 55 - 273
Target Start/End: Complemental strand, 11829628 - 11829410
Alignment:
| Q |
55 |
cattcctttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaacta |
154 |
Q |
| |
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|||||||||||| |||||||| | | ||||||||||||||||||||||| |||||||||||| || |||| ||||||||||| |||||||| | |
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| T |
11829628 |
cattcctttgggaagagaatctaaatttctgcattcagaaagaaccagtctttcaagtgaagtgaggttacctatactttctggtaaagaagttaaacca |
11829529 |
T |
|
| Q |
155 |
gggcaatcataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaatgtaagagactcaa |
254 |
Q |
| |
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| |||||||||||||| || |||||||| | ||||| |||| ||| ||| | || ||||| | ||||||||||||||||||||||||||||| | || |
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| T |
11829528 |
tgacaatcataaatcctcaagtctttcaaagttttcacgttttcaactccccatggaagggacttcagttttggaatactccttaatgtaagagattgaa |
11829429 |
T |
|
| Q |
255 |
gctttataagaccctccca |
273 |
Q |
| |
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| ||| | ||||||||||| |
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| T |
11829428 |
ggtttttcagaccctccca |
11829410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 249
Target Start/End: Complemental strand, 11861727 - 11861533
Alignment:
| Q |
55 |
cattcctttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaacta |
154 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| || |||| ||||||||||| |||||||| | |
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| T |
11861727 |
cattcctttgggcagagaatctaactttctgcattcagaaagaaccagtttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaacca |
11861628 |
T |
|
| Q |
155 |
gggcaatcataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaatgtaagaga |
249 |
Q |
| |
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| ||||||||||||||||| |||||||| | |||| ||| ||| ||| | || ||||| | ||||||||||||||||||||||||||||| |
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| T |
11861627 |
tgacaatcataaatccttaagtctttcaaagtgttcacattttcaactccccatggaagggacttaagttttggaatactccttaatgtaagaga |
11861533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 249
Target Start/End: Original strand, 11900798 - 11900985
Alignment:
| Q |
62 |
ttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaat |
161 |
Q |
| |
|
||||||||| |||| | | ||||||||||||||| ||| |||| | ||| |||||||| || ||||| |||||| || | ||||| || | |||||| |
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| T |
11900798 |
ttgggcagataatctaaatttctgcattcagaaataactagtttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaat |
11900897 |
T |
|
| Q |
162 |
cataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaatgtaagaga |
249 |
Q |
| |
|
|||||| ||||||||| | ||| || ||||||||| ||| | | | || ||||| | ||||| ||||||||||||||||||||||| |
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| T |
11900898 |
cataaagccttaaatcatgcaaagagttcaagttttcaatttcccttggaagggacttgagtttgggaatactccttaatgtaagaga |
11900985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 12040198 - 12040103
Alignment:
| Q |
382 |
acaatctcgaatgtgaagttctttaagggaagtgaagccttcaagccaattctgtggtggagattcttcaatacgctcgattaccatgaacttcaa |
477 |
Q |
| |
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||||||||||||||||||||| ||||| ||| ||||| || |||||| ||| |||||||||| ||||||||||| ||||||||| ||||||| |
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| T |
12040198 |
acaatctcgaatgtgaagttccttaagtgaaatgaagtttttaagccatctcttcggtggagattggtcaatacgctcaattaccatggacttcaa |
12040103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 477
Target Start/End: Complemental strand, 11829310 - 11829182
Alignment:
| Q |
349 |
cttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtgaagttctttaagggaagtgaagccttcaagccaattctgtggtggagattct |
448 |
Q |
| |
|
||||||||||||||||| |||| || || |||||||| |||||||||||| | ||| ||| ||||| || ||||||| ||| ||||||||||| |
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| T |
11829310 |
cttgaaaccttgtggtagagactccaaaataaaacaatctctaatgtgaagttcctcaagtgaaatgaagtttttaagccaactctctggtggagattgg |
11829211 |
T |
|
| Q |
449 |
tcaatacgctcgattaccatgaacttcaa |
477 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| |
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|
| T |
11829210 |
tcaatgcgctcaattaccatggacttcaa |
11829182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 468
Target Start/End: Original strand, 11901082 - 11901201
Alignment:
| Q |
349 |
cttgaaaccttgtggtaatgactttaagttaggacaatctcgaatgtgaagttctttaagggaagtgaagccttcaagccaattctgtggtggagattct |
448 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||| |||||||||||| | ||| ||| ||| || |||||| ||| |||||||| || |
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| T |
11901082 |
cttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcctcaagcgaaacaaagtttttaagccacctctctggtggagtttgc |
11901181 |
T |
|
| Q |
449 |
tcaatacgctcgattaccat |
468 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
11901182 |
tcaatacgctcaattaccat |
11901201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 12040353 - 12040304
Alignment:
| Q |
224 |
tttggaatactccttaatgtaagagactcaagctttataagaccctccca |
273 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
12040353 |
tttggaatactccttaatgtaagagaacgaaggtttatcagaccctccca |
12040304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 12040522 - 12040473
Alignment:
| Q |
55 |
cattcctttgggcagagaatccatacttctgcattcagaaagaaccagtt |
104 |
Q |
| |
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||||||||||||||||||||| | |||||||||| ||||||||||||| |
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|
| T |
12040522 |
cattcctttgggcagagaatctaactttctgcattccgaaagaaccagtt |
12040473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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