View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11276_low_8 (Length: 518)
Name: NF11276_low_8
Description: NF11276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11276_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 4498439 - 4498925
Alignment:
| Q |
18 |
ttgatctttcattgaacaaaatttcatgtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaacaacaacttatcagg |
117 |
Q |
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| T |
4498439 |
ttgatctttcattgaacaaaatttcatgtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaacaacaacttatcagg |
4498538 |
T |
|
| Q |
118 |
aagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaacaattgtaccaaa |
217 |
Q |
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| T |
4498539 |
aagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaacaattgtaccaaa |
4498638 |
T |
|
| Q |
218 |
cttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcagcagggttttggg |
317 |
Q |
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| T |
4498639 |
cttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacatcagatttctacataggaatgggagttggatttgcagcagggttttggg |
4498738 |
T |
|
| Q |
318 |
gggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgtctttat |
417 |
Q |
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| T |
4498739 |
gggtttgcattgctactttcttgatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgtctttat |
4498838 |
T |
|
| Q |
418 |
ctgtcaagagggacgaaaatgtgggaattggaccatcccgctgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
504 |
Q |
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| T |
4498839 |
ctgtcaagagggatgaaaatgtgggaattggaccataccgccgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
4498925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 4329472 - 4329074
Alignment:
| Q |
16 |
acttgatctttcattgaacaaaatttcatgtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaacaacaacttatca |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329472 |
acttgatctttcattgaacaaaatttcaggtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaacaacaacttatca |
4329373 |
T |
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| Q |
116 |
ggaagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcctgtgatgaacaattgtacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||| ||||||||||||||| |||||||| | |
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| T |
4329372 |
ggaagaattccaactagcactcaacttcagagctttgaagcacttaactatgcaggtaatcctcagctttgtggtcctcctgtgatgaataattgtacaa |
4329273 |
T |
|
| Q |
216 |
aacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcagcagggttttg |
315 |
Q |
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|| | ||||||||||||||| |||||||||| ||||| |||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4329272 |
aaatgaaacaagttttggagcgtggaaattctgatgctggtttcgttgacacatcagatttctacgtaggaatgggagttggatttgcagcagggttttg |
4329173 |
T |
|
| Q |
316 |
gggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgtctt |
414 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4329172 |
gggggtttgcattgctattttctttaacagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgagacctttgtctt |
4329074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 504
Target Start/End: Complemental strand, 4329036 - 4328946
Alignment:
| Q |
418 |
ctgtcaagagggacgaaaatgtgggaattggaccatcccgctg----ctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
504 |
Q |
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||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
4329036 |
ctgtcaagagggatgaaaatgtggaaattggaccataccgcacgccactaggagtctggtcgatattgaagttgcattgaagtctcatatt |
4328946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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