View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11277_high_1 (Length: 402)
Name: NF11277_high_1
Description: NF11277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11277_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 45056775 - 45057119
Alignment:
| Q |
19 |
ttagactagctgtacaagaagaagaacgattatagaaaagtcgagatcaagattaagaagaaaagttcctaaaccgaaaaacctaaaatgtactgaaaat |
118 |
Q |
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| T |
45056775 |
ttagactagctgtacaagaagaagaacgattatagaaaaatcgagatcaagattaagaagaaaagttcctaaaccgaaaaacctaaaatgtactgaaaat |
45056874 |
T |
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| Q |
119 |
gtatattatatcatttacgattttcgttgaaaaggagaatggcgagtacaagagcaacgataatagcgtttggaggacgaggcggtggtggaggaagtga |
218 |
Q |
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| T |
45056875 |
gtatattatatcatttacgattttcgttgaaaaggagaatggcgagtacaagagcaacgataatagcgtttgggggacgaggcggtggtggaggaagtga |
45056974 |
T |
|
| Q |
219 |
aggaaaggacaaacgagacattttctcacgtgtgaggttttctcgagaaaatatttttgagagagaaaattaggagaaagagggaaaaacttgcgtaaga |
318 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45056975 |
aggaaaagacaaacgagacattctctcacgtgtgaggttttctcgagaaaatatttttgagagagaaaattaggagaaagagggaaaaacttgcgtaaga |
45057074 |
T |
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| Q |
319 |
agtaaaacaaaaccaagaaccaaaaggaagtaagagactactgag |
363 |
Q |
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| T |
45057075 |
agtaaaacaaaaccaagaaccaaaaggaagtaagagactactgag |
45057119 |
T |
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