View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11277_low_2 (Length: 376)

Name: NF11277_low_2
Description: NF11277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11277_low_2
NF11277_low_2
[»] chr1 (5 HSPs)
chr1 (17-227)||(4679624-4679834)
chr1 (56-128)||(29464835-29464907)
chr1 (197-298)||(15593801-15593903)
chr1 (22-151)||(15593996-15594128)
chr1 (56-128)||(29214703-29214775)
[»] chr7 (9 HSPs)
chr7 (20-180)||(8658295-8658455)
chr7 (21-133)||(8586783-8586895)
chr7 (20-176)||(1300391-1300550)
chr7 (56-128)||(13334477-13334549)
chr7 (22-128)||(8666403-8666509)
chr7 (56-128)||(10495483-10495555)
chr7 (22-128)||(8672147-8672253)
chr7 (19-117)||(8615710-8615808)
chr7 (63-130)||(8653423-8653490)
[»] chr2 (2 HSPs)
chr2 (23-130)||(16658596-16658703)
chr2 (21-132)||(16663072-16663183)
[»] chr4 (1 HSPs)
chr4 (23-128)||(9336970-9337075)
[»] chr8 (1 HSPs)
chr8 (205-285)||(1767146-1767227)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 4679624 - 4679834
Alignment:
Q  17 agtgaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagc 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  4679624 agtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacagaaagaaatagatgttcttgaggatcatctgaaggagt 4679723  T
Q  117 tggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttctttattcagaaaagtgctcaaacatattacttaaattgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679724 tggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttctttattcagaaaagtgctcaaacatattacttaaattgt 4679823  T
Q  217 ttccgttttct 227  Q
    ||| |||||||    
T  4679824 ttctgttttct 4679834  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 29464907 - 29464835
Alignment:
Q  56 ttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 128  Q
    |||||||||||||||||| || ||||||||| | |||||||||||| ||||||| ||||||||||||||||||    
T  29464907 ttgcttgataagaataacaaaaagaaagaaacagatgttcttgagggtcatctggaggagctggagagcatgt 29464835  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 15593903 - 15593801
Alignment:
Q  197 aaacatattacttaaattgtttccgttttctgtcttgtttt-tagttttattaacttatttaaagaccttgcttccagataaagatccctctcaggctct 295  Q
    |||||| || ||||||||||||  ||||||||||||||||| |||||||| || | ||||| || |||||||||||| || ||||||||| |||||| ||    
T  15593903 aaacatgttgcttaaattgtttgtgttttctgtcttgttttctagttttagtagcatatttgaaaaccttgcttccaaatcaagatccctatcaggcact 15593804  T
Q  296 tgt 298  Q
    |||    
T  15593803 tgt 15593801  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 15594128 - 15593996
Alignment:
Q  22 aaagatcaacgatgcaattacggtggccaccaacttgcttgataagaa---taacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctg 118  Q
    ||||||||| | ||||||||| ||||| || || ||||||||||||||   |||| | || || ||| || |||||||||||| | || ||||||||||     
T  15594128 aaagatcaatggtgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaaggagctc 15594029  T
Q  119 gagagcatgttggaaaagcttgaagtcaagact 151  Q
    ||||||||||| ||||| |||| ||||||||||    
T  15594028 gagagcatgttcgaaaaccttgtagtcaagact 15593996  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29214703 - 29214775
Alignment:
Q  56 ttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 128  Q
    |||||||||||||||||| || ||||| ||||| |||||||| ||| ||||||  ||||||||||||||||||    
T  29214703 ttgcttgataagaataacaaagagaaataaatagatgttctttagggtcatctcgaggagctggagagcatgt 29214775  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 8658455 - 8658295
Alignment:
Q  20 gaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctgg 119  Q
    |||||||||||| |||||| |||  |||| || ||||||||| || |||||||| ||||| |  ||||| ||||| ||||||||||||||||||||||||    
T  8658455 gaaaagatcaacaatgcaactaccttggcaacaaacttgcttcatgagaataacaaacagcagaaaatagatgttgttgaggatcatctgaaggagctgg 8658356  T
Q  120 agagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttcttt 180  Q
    | | ||||||||||||||||| |||||| ||| ||| |||||| |||||||||||||||||    
T  8658355 aaatcatgttggaaaagcttgtagtcaatactggcattgagaataagcacaaatcttcttt 8658295  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 8586783 - 8586895
Alignment:
Q  21 aaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctgga 120  Q
    ||||||||||  ||||||||||  |||| || || |||||||||||||||||| |  |||| || ||| ||||||||| |||||||||||||||||| ||    
T  8586783 aaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttga 8586882  T
Q  121 gagcatgttggaa 133  Q
    |||||||||||||    
T  8586883 gagcatgttggaa 8586895  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 1300550 - 1300391
Alignment:
Q  20 gaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacga---acagaaagaaataaatgttcttgaggatcatctgaaggagc 116  Q
    |||||||||||| |||||||||| ||  | || | ||||||||||||||||||| |   |||| |  ||||| ||||| ||||||||||||| |||||||    
T  1300550 gaaaagatcaacaatgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggagc 1300451  T
Q  117 tggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatctt 176  Q
    ||||||   ||||||||||||||| |||||| ||| ||| |||||| || | ||||||||    
T  1300450 tggagattttgttggaaaagcttgtagtcaatactggcattgagaataaacccaaatctt 1300391  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 13334477 - 13334549
Alignment:
Q  56 ttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 128  Q
    |||||||||||||||||  || ||||||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13334477 ttgcttgataagaataataaagagaaagaaatagatgttcttgagggtcatctcgaggagctggagagcatgt 13334549  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 8666509 - 8666403
Alignment:
Q  22 aaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggag 121  Q
    |||||||||| |||||||||| || || |   | |||||||||||||||||  || ||||||||||| |||||||||||| | ||||| |||||||||||    
T  8666509 aaagatcaacaatgcaattactgttgctatggatttgcttgataagaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggag 8666410  T
Q  122 agcatgt 128  Q
    || ||||    
T  8666409 agaatgt 8666403  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 10495483 - 10495555
Alignment:
Q  56 ttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 128  Q
    ||||||||||||| |||  || ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  10495483 ttgcttgataagagtaataaagagaaaaaaatagatgttcttgagaatcatctggaggagctggagagcatgt 10495555  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 8672147 - 8672253
Alignment:
Q  22 aaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggag 121  Q
    |||||||||| |||||||||| || || |   | |||||||||| ||||||  || ||||||||||| |||||||||||| | ||||| |||||||||||    
T  8672147 aaagatcaacaatgcaattactgttgctatggatttgcttgatatgaataaaaaagagaaagaaatagatgttcttgagggttatctggaggagctggag 8672246  T
Q  122 agcatgt 128  Q
    || ||||    
T  8672247 agaatgt 8672253  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 8615808 - 8615710
Alignment:
Q  19 tgaaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagct 117  Q
    |||||| |||||| |||||||||| ||||| || || |||||||||| ||||||| | ||||  ||| || | ||||| || |||||||||||||||||    
T  8615808 tgaaaatatcaacaatgcaattactgtggctacaaatttgcttgataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggagct 8615710  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 8653490 - 8653423
Alignment:
Q  63 ataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttg 130  Q
    ||||||||||| |||| | ||||||| ||||||||||| ||||||| |||||| || | |||||||||    
T  8653490 ataagaataaccaacatatagaaatagatgttcttgagcatcatcttaaggagatgaacagcatgttg 8653423  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 16658596 - 16658703
Alignment:
Q  23 aagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggaga 122  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||||||||| |||| || |||| | |||||||||||  ||||||||||||| ||||||    
T  16658596 aagatcaacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaacagatgttcttgagtttcatctgaaggagatggaga 16658695  T
Q  123 gcatgttg 130  Q
    ||||||||    
T  16658696 gcatgttg 16658703  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 16663072 - 16663183
Alignment:
Q  21 aaaagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctgga 120  Q
    ||||||||||  |||||||||||||||| |   | |||||| || |||| ||| |   ||| ||| || |||||||||||||||||||||||||||| ||    
T  16663072 aaaagatcaatcatgcaattacggtggctaaagatttgcttcatgagaagaaccaggggaatgaagtagatgttcttgaggatcatctgaaggagcttga 16663171  T
Q  121 gagcatgttgga 132  Q
    ||| ||||||||    
T  16663172 gagtatgttgga 16663183  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 9336970 - 9337075
Alignment:
Q  23 aagatcaacgatgcaattacggtggccaccaacttgcttgataagaataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggaga 122  Q
    ||||||||| |||||||||| || || |  || |||||||||||||||||| || ||||||||||| |||||||||||| ||||||| |||| || ||||    
T  9336970 aagatcaacaatgcaattactgttgctatgaatttgcttgataagaataacaaagagaaagaaatagatgttcttgagggtcatctggaggatctagaga 9337069  T
Q  123 gcatgt 128  Q
    ||||||    
T  9337070 gcatgt 9337075  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 1767227 - 1767146
Alignment:
Q  205 tacttaaattgtttccgttttctgtcttgttttt-agttttattaacttatttaaagaccttgcttccagataaagatccct 285  Q
    ||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||| || |||||||||| |||| |||||||||    
T  1767227 tacttaaattgtttctgttttctttcttgttttttagttttagtaacatatttgaaaaccttgcttcaagatcaagatccct 1767146  T

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