View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11277_low_3 (Length: 308)

Name: NF11277_low_3
Description: NF11277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11277_low_3
NF11277_low_3
[»] chr6 (1 HSPs)
chr6 (176-251)||(5469529-5469604)
[»] chr2 (4 HSPs)
chr2 (247-298)||(3778779-3778830)
chr2 (247-298)||(40328543-40328594)
chr2 (252-298)||(19265786-19265832)
chr2 (252-298)||(35134950-35134996)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 5469604 - 5469529
Alignment:
Q  176 gaatttcagtgtgaaattcaattagctagattaatgattatggatggtttaatttattcacttgaaagaattatta 251  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  5469604 gaatttcggtgtgaaattcaattagctagattaatgattatggatgctttaatttattcacttgaaagaataatta 5469529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 3778830 - 3778779
Alignment:
Q  247 tattaatcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3778830 tattcatcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 3778779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 40328543 - 40328594
Alignment:
Q  247 tattaatcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40328543 tattcatcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 40328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 19265786 - 19265832
Alignment:
Q  252 atcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19265786 atcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 19265832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 35134996 - 35134950
Alignment:
Q  252 atcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35134996 atcaggtactcctcatgggaaaatcactaatctcacaaacatctctg 35134950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University