View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_1 (Length: 791)
Name: NF11278_high_1
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 254 - 780
Target Start/End: Complemental strand, 24634763 - 24634237
Alignment:
| Q |
254 |
tcgatactagatatttcttcatacatcaagattaaaataatacatatgacgatccacatattaatccaacatttgtcgaaaattagaaacacaattacat |
353 |
Q |
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| T |
24634763 |
tcgatactagatatttcttcatacatcaagattaaaataatacatatgacgatccacatattaatccaacatttgttgaaaattagaaacacaattacat |
24634664 |
T |
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| Q |
354 |
tttaaacccagcagtaacacatacacagtttgtgttgaaaccttgaaatttacttataaaagtttacaattgaaacataaattagaagatcctgtttact |
453 |
Q |
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| T |
24634663 |
tttaaacccagcagtaacacatacacagtttgtgttgaaaccttgaaatttacttatagaagtttacaattgaaacataaattagaagatcctgtttact |
24634564 |
T |
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| Q |
454 |
agttagctattgttccttgttatcttcttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcacgttatcaat |
553 |
Q |
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| T |
24634563 |
acttaactattgttccttgttatcttcttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcaagttatcaat |
24634464 |
T |
|
| Q |
554 |
aaatgagacatttcatttacaagaaatcagaactaggcttttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaacctt |
653 |
Q |
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| T |
24634463 |
aaatgagacatttcatttacaagaaatcagaactaggctcttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaacctt |
24634364 |
T |
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| Q |
654 |
cattttcatatcagaaccggactggcatggagagacggtaccatttgactattaatattttacttgaccgactagagaaacctcacttaacactggtttg |
753 |
Q |
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| T |
24634363 |
cattttcatatcagaaccggactggcatggagagacgataccatttgactattaatattttacttgaccgactagagaaacctcacttaacactggtttg |
24634264 |
T |
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| Q |
754 |
aatgttcaagtcatgccatctctgctc |
780 |
Q |
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| T |
24634263 |
aatgttcaagtcatgccatctcagctc |
24634237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 24634999 - 24634793
Alignment:
| Q |
18 |
gcatatttgtattacttgaatgtaattgcctgtatcagtttgtttacacaactttggaaccctccatgtttttactacttaaaatgtattggaacaaagg |
117 |
Q |
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| T |
24634999 |
gcatatttgtattacttgaatgtaattgcctgtatcaatttgtttacacaactttggaaccctccatttttttactacttaaaatgtattggaacaaagg |
24634900 |
T |
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| Q |
118 |
tgaaacaatgtagaaattctcgaaattcatcaaattcaggaacgcagaaaacaaatgttaggagtcttgcccggaagaatgaagaatgtggttaagaatc |
217 |
Q |
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| T |
24634899 |
tgaaacaatgtagaaattctcgaaattcatcaaattcaggaacgcagaaaacaaatgttaggagtctagcccggaagaatgaagaatgtggttaagaatc |
24634800 |
T |
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| Q |
218 |
tcgcacg |
224 |
Q |
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| T |
24634799 |
tcgcacg |
24634793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 24628559 - 24628511
Alignment:
| Q |
388 |
ttgaaaccttgaaatttacttataaaagtttacaatt-gaaacataaat |
435 |
Q |
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| T |
24628559 |
ttgaaaccttgaaatttacttataaaagtttacaattagaaacataaat |
24628511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 42542330 - 42542372
Alignment:
| Q |
381 |
gtttgtgttgaaaccttgaaatttacttataaaagtttacaat |
423 |
Q |
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| T |
42542330 |
gtttctgttgaaaccttgaaatttacttataaatgtttacaat |
42542372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 780
Target Start/End: Original strand, 32876770 - 32876858
Alignment:
| Q |
692 |
taccatttgactattaatattttacttgaccgactagagaaacctcacttaacactggtttgaatgttcaagtcatgccatctctgctc |
780 |
Q |
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| T |
32876770 |
taccatgtgacttgtaataccttacttgaccgactagcaagatctcactcaacactggtttgattgttcaagtcaggccagctcagctc |
32876858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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