View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_103 (Length: 290)

Name: NF11278_high_103
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_103
NF11278_high_103
[»] chr7 (2 HSPs)
chr7 (182-281)||(27658121-27658220)
chr7 (45-104)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (182-281)||(37605842-37605941)
chr5 (41-104)||(37606029-37606092)
chr5 (194-274)||(33361024-33361104)
chr5 (194-274)||(5742432-5742512)
chr5 (42-84)||(30891764-30891806)
[»] chr6 (2 HSPs)
chr6 (41-104)||(31559483-31559546)
chr6 (194-274)||(18085300-18085380)
[»] scaffold0856 (1 HSPs)
scaffold0856 (194-274)||(1271-1351)
[»] chr4 (1 HSPs)
chr4 (42-79)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 27658121 - 27658220
Alignment:
Q  182 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  45 aatgataagtaaacacaagaatacaaacacaaaaatgacaccatacactattactcaata 104  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 37605941 - 37605842
Alignment:
Q  182 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 281  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 37606092 - 37606029
Alignment:
Q  41 caggaatgataagtaaacacaagaatacaaacacaaaaatgacaccatacactattactcaata 104  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606092 caggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 33361104 - 33361024
Alignment:
Q  194 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 274  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactccttc 33361024  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 5742432 - 5742512
Alignment:
Q  194 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 274  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||||||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactccttc 5742512  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  42 aggaatgataagtaaacacaagaatacaaacacaaaaatgaca 84  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 31559483 - 31559546
Alignment:
Q  41 caggaatgataagtaaacacaagaatacaaacacaaaaatgacaccatacactattactcaata 104  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559483 caggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 18085380 - 18085300
Alignment:
Q  194 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 274  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactccttc 18085300  T

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Target: scaffold0856 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 1351 - 1271
Alignment:
Q  194 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 274  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactccttc 1271  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  42 aggaatgataagtaaacacaagaatacaaacacaaaaa 79  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

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