View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_105 (Length: 278)
Name: NF11278_high_105
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_105 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 56069810 - 56069678
Alignment:
| Q |
19 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
118 |
Q |
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| T |
56069810 |
cacagaggtgtaccacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
56069715 |
T |
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| Q |
119 |
tttctcgtttctttccaatttcatcgacgatgtttcc |
155 |
Q |
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| T |
56069714 |
tttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 56069644 - 56069533
Alignment:
| Q |
156 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
255 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
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| Q |
256 |
aaccctgatgtc |
267 |
Q |
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| T |
56069544 |
aaccctgatgtc |
56069533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 38398695 - 38398799
Alignment:
| Q |
156 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
255 |
Q |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
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| Q |
256 |
aaccc |
260 |
Q |
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||||| |
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| T |
38398795 |
aaccc |
38398799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 38398508 - 38398594
Alignment:
| Q |
19 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
110 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| | |||||||||||| |||||||||| |
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| T |
38398508 |
cacagaggtgtaccacaattggcagaagctggtaag-acacttta----atctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 10171013 - 10171107
Alignment:
| Q |
163 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaa |
257 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaa |
10171107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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