View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_106 (Length: 276)
Name: NF11278_high_106
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_106 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 121481 - 121732
Alignment:
| Q |
18 |
attcccacccccaccttacctaccgtcactgttccaaggaagcaggcaaagactgctccaagaagaaaggacaatgacggagggtcaggtggagatggtc |
117 |
Q |
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| T |
121481 |
attcccacccccaccttacctaccgtcactgttccaaggaagcaggcaaagactgctccaagaagaaaggacaatgacggagggtcaggtggagatggtc |
121580 |
T |
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| Q |
118 |
ggaggtgtctgcattgcatgacagacaagacgccacagtggcgaactgggcctaatggcccaaaaacattatgcaatgcttgtggtgtaagatataagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
121581 |
ggaggtgtctgcattgcatgacagacaagacgccacagtggcgaaccgggcctaatggcccaaaaacattatgcaatgcttgtggtgtaagatataagtc |
121680 |
T |
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| Q |
218 |
gggtcgattggtgcccgaatacaggcctgcagctagccctacatctgtgctc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
121681 |
gggtcgattggtgcccgaatacaggcctgcagctagccctacatttgtgctc |
121732 |
T |
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