View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_high_11 (Length: 629)
Name: NF11278_high_11
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_11 |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 13397954 - 13397532
Alignment:
| Q |
1 |
atatcaaaatgatttaaattaaattgtctttttgtaaacaataattcgattcattttgcctttgtaa----agatttgattcaaaccatcaaaagagaaa |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
13397954 |
atatcaaaatgatttaaattaaattgtctttttgtaaacaataattagattcattttgcctttgtaattaaagatttgattcaattcatcaaaagagaaa |
13397855 |
T |
|
| Q |
97 |
cataaggatagaaaagtgcttcgattcaaagaatgtataccaattttgaatcgaatcaaaacttgagatatgagattctgaaaagagatgacaactaaac |
196 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13397854 |
cataaggatagaaaaatgcttcgattcaaagaatgtataccaattttgaatagaatcaaaacttgagatatgagattctgaaaagagatgacaaccaaac |
13397755 |
T |
|
| Q |
197 |
ttgtttctacaacgatctacgaatgtcttacaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaac |
296 |
Q |
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||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
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| T |
13397754 |
ttgttgctacaatgatctacgaatgtcttacaatggtaaccaagttacaactaaacaaaaacataatctaattaattcaacaagtgaacatcatcagaac |
13397655 |
T |
|
| Q |
297 |
tatttaattgaaccaaggagcaaactacatataacgaagcatatgaccacatgtgcaagtaagtggaagctttccatgaa--aaaataaagtctttgatc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13397654 |
tatttaattgaaccaaggagcaaactacatataacgaaacatatgaccacatgtgcaagtaagtggaagctttccatgaaaaaaaataaagtctttgatc |
13397555 |
T |
|
| Q |
395 |
tccgatcatacgtgggaacaagc |
417 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
13397554 |
tctgatcatacgtgggaacaagc |
13397532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 448 - 629
Target Start/End: Complemental strand, 13397532 - 13397352
Alignment:
| Q |
448 |
caacatatgatgtctctaagagatacaaatcccgaatagtggtcaaggattctaacaaaacgaagaattttactatgaaatttttgctccaatagttaag |
547 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
13397532 |
caacatatgatgtctctaagagatacaaatcccgaatggtggtcaaggattctagcaaaaggaagaattttactatgaaatttt-gttccaatagttaag |
13397434 |
T |
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| Q |
548 |
ctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
629 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397433 |
ctcaatactatcatgtttctattaagtattgttgccattgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
13397352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 454 - 629
Target Start/End: Original strand, 19943884 - 19944063
Alignment:
| Q |
454 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
549 |
Q |
| |
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|||||| ||| |||||||||||| ||||| |||||||||| |||||| | ||||| |||| | || |||| ||| |||||||||||| | || ||||| |
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| T |
19943884 |
atgatggctcaaagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagct |
19943983 |
T |
|
| Q |
550 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
629 |
Q |
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||||||||||| || | | |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
19943984 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcatttc |
19944063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 19943782 - 19943856
Alignment:
| Q |
378 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
452 |
Q |
| |
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|||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||||| |
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| T |
19943782 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
19943856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 16117433 - 16117329
Alignment:
| Q |
223 |
cttacaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaac-tatttaattgaaccaaggagcaaac |
321 |
Q |
| |
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|||||||| |||||||||| | | | |||||||||||| |||| || || ||||| ||| || |||| |||||| ||| |||||||||||| || ||||| |
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| T |
16117433 |
cttacaatagtaactaagcgatagccaaacaaaaacattatcttatcaagtcaaggaataaatatcaacaaaacttatctaattgaaccaatgaacaaac |
16117334 |
T |
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| Q |
322 |
tacat |
326 |
Q |
| |
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||||| |
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| T |
16117333 |
tacat |
16117329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 465 - 629
Target Start/End: Original strand, 8272951 - 8273119
Alignment:
| Q |
465 |
aagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagctcaatactatca |
560 |
Q |
| |
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|||||||||||| ||||| |||||||||| |||||| | ||||| |||| | || |||| ||| |||||||||||| | || |||||||||||||||| |
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| T |
8272951 |
aagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagctcaatactatca |
8273050 |
T |
|
| Q |
561 |
tgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
629 |
Q |
| |
|
|| | | |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
8273051 |
ggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcatttc |
8273119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 454 - 629
Target Start/End: Complemental strand, 796887 - 796708
Alignment:
| Q |
454 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
549 |
Q |
| |
|
|||||| ||| |||||||||||| ||||| |||||||||| |||||| ||||| |||| | || |||| ||| |||||||||||| | || ||||| |
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| T |
796887 |
atgatggctcaaagagatacaaagcccgactagtggtcaaaggattccggcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagct |
796788 |
T |
|
| Q |
550 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
629 |
Q |
| |
|
||||||||||| || | | |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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|
| T |
796787 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcatttc |
796708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 796989 - 796915
Alignment:
| Q |
378 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
452 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
796989 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
796915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 8272838 - 8272912
Alignment:
| Q |
378 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
452 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
8272838 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
8272912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 454 - 629
Target Start/End: Original strand, 6691934 - 6692113
Alignment:
| Q |
454 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
549 |
Q |
| |
|
|||||| ||| |||||||||||| ||||| |||||||||| || ||| | ||||| |||| | || ||| ||| |||||||||||| | || ||||| |
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|
| T |
6691934 |
atgatggctcaaagagatacaaagcccgactagtggtcaaagggttccagcaaaaggaaggaattgactgcactgagatttttgctccagtggtgaagct |
6692033 |
T |
|
| Q |
550 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcatttc |
629 |
Q |
| |
|
||||||||||| || | | |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
6692034 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcatttc |
6692113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 452
Target Start/End: Original strand, 6691804 - 6691906
Alignment:
| Q |
354 |
agtaagtggaagctttccatgaaa----aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcaca |
449 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| |||||||| |
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| T |
6691804 |
agtaagtgggagcttgccatgaaagaggaaatgaagtctttgatctccaatcagacatgggagctagctaagttacccataggaaagaaggcacttcaca |
6691903 |
T |
|
| Q |
450 |
aca |
452 |
Q |
| |
|
||| |
|
|
| T |
6691904 |
aca |
6691906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 15784200 - 15784274
Alignment:
| Q |
226 |
acaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaactatt |
300 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| |||||| || ||||| | |||||||||||||||||| |
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|
| T |
15784200 |
acaatggtaactaagttgcaattaaacaaaaacattatctaaacaaatcaaggagaaaacatcatcaaaactatt |
15784274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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