View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_117 (Length: 257)
Name: NF11278_high_117
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_117 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28276704 - 28276922
Alignment:
| Q |
1 |
cgaacaagctcattagaaaattgtttgattgtcatgtgaatttcaaagatgcaaaaagtctagggttccaaatattatgtataagttttttatgcctcct |
100 |
Q |
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| T |
28276704 |
cgaacaagctcattagaaaaatgtttgattgtcatgtgaatttcaaagatacaaaaagtctggggttccaaatattatgtataagttttttatgcctcc- |
28276802 |
T |
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| Q |
101 |
tattatagatataaatgtac-ttttatatataattcttatgtaatgaacacttaatgaaaaagtggttagttaaattatttacccaattatctttctaaa |
199 |
Q |
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| T |
28276803 |
tattatagatataaatgtactttttatatataattcttatgtaatgaacacttaatgaaaaagt-gttagttaaattatttacccaattatctttctaaa |
28276901 |
T |
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| Q |
200 |
caaaagcaataaggtgaaagt |
220 |
Q |
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| T |
28276902 |
caaaagcaataaggtaaaagt |
28276922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 28296549 - 28296365
Alignment:
| Q |
38 |
gaatttcaaagatgcaaaaagtctagggttccaaatattatgtataagttttttatgcctccttattatagatataaatgtacttttatatataattctt |
137 |
Q |
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| T |
28296549 |
gaatttcaaagatacaaaaagtgtggggttccaaatattatgtataagttttctatgcctccttattatagatataaatgtacttttatatataactctt |
28296450 |
T |
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| Q |
138 |
atgtaatgaacacttaatgaaaaagtggttagttaaattatttacccaat--tatctttctaaacaaaagcaataaggtgaaagt |
220 |
Q |
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| T |
28296449 |
atgtaatgaacacttaatgaaaaagtggttagttaaattatttatccaattatatctttctaaacaaaagcaataaggtgaaagt |
28296365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28297453 - 28297408
Alignment:
| Q |
1 |
cgaacaagctcattagaaaattgtttgattgtcatgtgaatttcaa |
46 |
Q |
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| T |
28297453 |
cgaacaagctcattagaaaaatgtttgattgtcatgtgaatttcaa |
28297408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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