View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_122 (Length: 251)
Name: NF11278_high_122
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_122 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 39355532 - 39355303
Alignment:
| Q |
19 |
gcccactaatcaaactgaccacactcctaagcaattgtgactcctaaattaatgagaagaaagtttccaagtgtaagggtgggcgtttttatttgaaaaa |
118 |
Q |
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| T |
39355532 |
gcccactaatcaaactgaccacactcctaagcaattgtgactcctaaattaatgagaagaaagtttccaagtgtaagggtgggcgtttttatttgaaaaa |
39355433 |
T |
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| Q |
119 |
acgtcattaattctaaaatgccttactactctaaataaattgtttggttctcctcctgtcagaagacttgtccttgttgtggtaatggagatgagatggt |
218 |
Q |
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| T |
39355432 |
acgtcattaattctaaaatgccttactactctaaataaattgtttggttc---tcctgtcagaagacttgtccttgttgtagtaatgcagatgagatggt |
39355336 |
T |
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| Q |
219 |
acttcatgtgcttcgtgattatatgcgagcatc |
251 |
Q |
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| T |
39355335 |
acttcatgtgcttcgtgattatatgcgagcatc |
39355303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 44465153 - 44465322
Alignment:
| Q |
19 |
gcccactaatcaaactgaccacactcctaagcaattgtgactcctaaattaatgagaagaaagtttccaagtgtaagggtgggcgtttttatttgaaaaa |
118 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
44465153 |
gcccactaattaaactgaccacactcctaagcaaatgtgactcctaaattaatatgaagaaagtttctaagtgtatgggtgcgcgtttttatttgaaaaa |
44465252 |
T |
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| Q |
119 |
acgtcattaattctaaaatgccttactactctaaataaattgttt-ggttctcctcctgtcagaagacttgtc |
190 |
Q |
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| T |
44465253 |
ttgtgattaattataaaatgccttgctactctaaacaaatttttttggttctcc---tgtcagaggacttgtc |
44465322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 26207952 - 26208004
Alignment:
| Q |
184 |
acttgtccttgttgtggtaatggagatgagatggtacttcatgtgcttcgtga |
236 |
Q |
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| T |
26207952 |
acttttccttgttgtgggaatgcagatgagactgtccttcatgtgcttcgtga |
26208004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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