View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_125 (Length: 250)
Name: NF11278_high_125
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_125 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40464694 - 40464458
Alignment:
| Q |
1 |
tatatactatgctgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464694 |
tatatactatgctgcagcttactggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgc |
40464595 |
T |
|
| Q |
101 |
ctttatagcattaccaggttggtacaaccttctttctagctccaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464594 |
ctttatagcattaccaggttggtacaaccttctttctagctcaaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggc |
40464495 |
T |
|
| Q |
201 |
acatgtcaaaagaattaccgatcgaactagcgagtct |
237 |
Q |
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|||||||||||||||||||| || ||||||||||||| |
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| T |
40464494 |
acatgtcaaaagaattaccggtcaaactagcgagtct |
40464458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 77694 - 77801
Alignment:
| Q |
13 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
112 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
77694 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
77793 |
T |
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| Q |
113 |
accaggtt |
120 |
Q |
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|||||||| |
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| T |
77794 |
accaggtt |
77801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 40888590 - 40888483
Alignment:
| Q |
13 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
112 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
40888590 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
40888491 |
T |
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| Q |
113 |
accaggtt |
120 |
Q |
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|||||||| |
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| T |
40888490 |
accaggtt |
40888483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
30 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
123 |
Q |
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||||| ||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| |||||||||| ||||| || ||||||||||||| |
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| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 28270827 - 28270720
Alignment:
| Q |
13 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
112 |
Q |
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||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || || |
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| T |
28270827 |
tgcagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgcctt |
28270728 |
T |
|
| Q |
113 |
accaggtt |
120 |
Q |
| |
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|||||||| |
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| T |
28270727 |
accaggtt |
28270720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
39 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
88 |
Q |
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||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
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| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
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