View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_127 (Length: 250)
Name: NF11278_high_127
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_127 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 26030670 - 26030889
Alignment:
| Q |
12 |
acagagacaataataaaaaactatatggattcttccaatgtattcatgactgcacacaaataacgctcattaatttaatacctaatttaatttttcaatt |
111 |
Q |
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| T |
26030670 |
acagagtcaataataaaaaactatatggatttttccaatgtattcatgattgcacacaaataacgctcattaatttaatacctaatttaatttttcaatt |
26030769 |
T |
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| Q |
112 |
ttctttnnnnnnnnnnnnntcgattatctctcatctattttatctagtttcctccaatctttctcccgaacaatgtagannnnnnnnattctcattcttt |
211 |
Q |
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| T |
26030770 |
ttcttt---taaaaaaaaatcgattatctctcatctattttatcaagtttcctccaatctttctccccaacaatgtagattttttttattctcattcttt |
26030866 |
T |
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| Q |
212 |
tggtttaaactactcttatctct |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
26030867 |
tggtttaaactactcttatctct |
26030889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 38450682 - 38450582
Alignment:
| Q |
131 |
tcgattatctctcatctattttatctagtttcctccaatctttctcccgaacaatgtagannnnnnnnattctcattcttttggtttaaactactcttat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
38450682 |
tcgattatctctcatctattttatctagtttcctccaatttttctccccaacaacataga-attttttattctcattcttttagtttaaactactcttat |
38450584 |
T |
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| Q |
231 |
ct |
232 |
Q |
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|| |
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| T |
38450583 |
ct |
38450582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 26035145 - 26035232
Alignment:
| Q |
26 |
aaaaaactatatggattcttccaatgtattcatgactgcacacaaataacgctcattaatttaatacctaatttaatttttcaatttt |
113 |
Q |
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||||||||| ||||||| ||| ||||||||||||| |||||| |||| ||| |||||||||| ||||| |||| ||| | ||||||| |
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| T |
26035145 |
aaaaaactacatggatttttctaatgtattcatgattgcacaaaaattacggtcattaattttctacctgattttattgtccaatttt |
26035232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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