View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_13 (Length: 615)

Name: NF11278_high_13
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_13
NF11278_high_13
[»] chr5 (3 HSPs)
chr5 (1-331)||(8851510-8851840)
chr5 (352-598)||(8851836-8852083)
chr5 (379-419)||(3586351-3586391)
[»] chr8 (3 HSPs)
chr8 (2-176)||(31870188-31870362)
chr8 (379-459)||(42678095-42678175)
chr8 (381-425)||(38463907-38463951)
[»] chr4 (1 HSPs)
chr4 (379-475)||(1074262-1074358)
[»] chr7 (5 HSPs)
chr7 (383-472)||(8677531-8677620)
chr7 (381-439)||(42949262-42949320)
chr7 (374-471)||(9530381-9530478)
chr7 (379-415)||(6439450-6439486)
chr7 (403-459)||(23434547-23434603)
[»] chr1 (1 HSPs)
chr1 (385-470)||(24857109-24857194)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 8851510 - 8851840
Alignment:
Q  1 atgatggaggggcaatgtgcggcgtattggactacattggcaccgaatgtggaggagtatagtgggactgctgcgaggatgatagcttcggggtctggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8851510 atgatggaggggcaatgtgcggcgtattggactacattggcaccgaatgtggaggagtatagtgggactgctgcgaggatgatagcttcggggtctggac 8851609  T
Q  101 atgtgatcaagggaattttgtggtgtggtgatgttactatggataggttgcaatgggggaatcaggttatgaagaaaaggatggcagctggtgaacgtga 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8851610 atgtgatcaaggggattttgtggtgtggtgatgttactatggataggttgcaatgggggaatcaggttatgaagaaaaggatggcagctggtgaacgtga 8851709  T
Q  201 tgctcagattagtcctgaaactttgaagcggatcagaaggtatattgttctgctttgctttctgtccccaaatctataaatctcaatcatgttagcatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8851710 tgctcagattagtcctgaaactttgaagcggatcagaaggtatattgttctgctttgctttctgtccccaaatctataaatctcaatcatgttagcatat 8851809  T
Q  301 gtgaaatttcagaaattaataataaattatt 331  Q
    |||||||||||||||||| ||||||||||||    
T  8851810 gtgaaatttcagaaattagtaataaattatt 8851840  T

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Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 352 - 598
Target Start/End: Original strand, 8851836 - 8852083
Alignment:
Q  352 ttatttaaaccc-agagttgggatagtagtgaaggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaattt 450  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  8851836 ttatttaaaccccagagttgggatagtagtgaaggcttgagacctaggagtgtgttcctctctaggtctcaggttcaaatttcccaggtaccaacaattc 8851935  T
Q  451 ttgtgttgggtcagtccatacaaagcattcactatggacggtgggattggttgcccggattagtcggtcctagggttcggattttgtaactttatttgta 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8851936 ttgtgttgggtcagtccatacaaagcattcactatggacggtgggattggttgcccggattagtcggtcctagggttcggattttgtaactttatttgta 8852035  T
Q  551 ggatatgaattnnnnnnntccaatcttgtgattttaagatgataacat 598  Q
    |||||||||||       |||||| |||||||||||||||||||||||    
T  8852036 ggatatgaattaaaaaaatccaattttgtgattttaagatgataacat 8852083  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 3586391 - 3586351
Alignment:
Q  379 gtgaaggcttgagacctaggagtgtgttcctctctaggtct 419  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  3586391 gtgaaggcttgagacctaggagtgtgttactgactaggtct 3586351  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 31870362 - 31870188
Alignment:
Q  2 tgatggaggggcaatgtgcggcgtattggactacattggcaccgaatgtggaggagtatagtgggactgctgcgaggatgatagcttcggggtctggaca 101  Q
    ||||||||| |  |||||| || ||||||||||||||||| || ||||||||||| |||||||| || || |||| | |||| ||  | || ||||| ||    
T  31870362 tgatggaggagagatgtgctgcctattggactacattggctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtca 31870263  T
Q  102 tgtgatcaagggaattttgtggtgtggtgatgttactatggataggttgcaatgggggaatcaggttatgaagaa 176  Q
      || | || || |||||||||||||| ||||||||| | ||||||||| ||||||| ||| || ||||||||||    
T  31870262 attggttaaagggattttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaa 31870188  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 459
Target Start/End: Original strand, 42678095 - 42678175
Alignment:
Q  379 gtgaaggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgg 459  Q
    |||||| ||||||||||||||||||| ||| |||||||||| |||||| | | | |||||| ||||||||| |||||||||    
T  42678095 gtgaagacttgagacctaggagtgtgctccactctaggtctcaggttcgagtcttccaggtgccaacaattcttgtgttgg 42678175  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 38463907 - 38463951
Alignment:
Q  381 gaaggcttgagacctaggagtgtgttcctctctaggtctaaggtt 425  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||    
T  38463907 gaaggcttgggacctaggagtgtgctcctctctaggtctcaggtt 38463951  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 475
Target Start/End: Original strand, 1074262 - 1074358
Alignment:
Q  379 gtgaaggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgggtcagtccatacaaag 475  Q
    |||||||||||||||||||||||||| |||||||||| ||| || ||| ||||    |||| || | |||||||||||| |||||||||||||||||    
T  1074262 gtgaaggcttgagacctaggagtgtgctcctctctagttctcagcttcgaattctttaggtgcctataatttttgtgttaggtcagtccatacaaag 1074358  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 8677620 - 8677531
Alignment:
Q  383 aggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgggtcagtccataca 472  Q
    |||||||||||||||||| ||| |||||||||||||| |||||| ||   || |||||| |||||||  |||||| ||||||||||||||    
T  8677620 aggcttgagacctaggagggtgctcctctctaggtctcaggttcgaagccccaaggtacaaacaattcctgtgttaggtcagtccataca 8677531  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 42949320 - 42949262
Alignment:
Q  381 gaaggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggt 439  Q
    ||||||||| |||||||||||||| |||||||||||| | | |||| ||||||| ||||    
T  42949320 gaaggcttgggacctaggagtgtgctcctctctaggtttcatgttcgaatttcctaggt 42949262  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 471
Target Start/End: Original strand, 9530381 - 9530478
Alignment:
Q  374 tagtagtgaaggcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgggtcagtccatac 471  Q
    |||| ||| ||||||| |||||| ||||||   |||||||||||||||||||  |||  || || | |||||||||| |||||||| ||||| |||||    
T  9530381 tagtggtgcaggcttgggacctaagagtgtagccctctctaggtctaaggtttgaatcccctagatgccaacaatttctgtgttggatcagttcatac 9530478  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 6439486 - 6439450
Alignment:
Q  379 gtgaaggcttgagacctaggagtgtgttcctctctag 415  Q
    ||||||||||||||||||||||| || ||||||||||    
T  6439486 gtgaaggcttgagacctaggagtttgctcctctctag 6439450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 23434603 - 23434547
Alignment:
Q  403 tgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgg 459  Q
    ||||||||||||||||| ||||||||||  ||||| |  |||||||| |||||||||    
T  23434603 tgttcctctctaggtctcaggttcaaatcccccagatgacaacaattcttgtgttgg 23434547  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 24857194 - 24857109
Alignment:
Q  385 gcttgagacctaggagtgtgttcctctctaggtctaaggttcaaatttcccaggtaccaacaatttttgtgttgggtcagtccata 470  Q
    ||||| |||||| ||||||| ||||||||| |||| |||||  ||||  ||||||||||||||||  ||||||||| |||||||||    
T  24857194 gcttgggacctaagagtgtgctcctctctaagtctcaggtttgaattctccaggtaccaacaattcatgtgttgggccagtccata 24857109  T

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