View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_130 (Length: 250)
Name: NF11278_high_130
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_130 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 55966714 - 55966960
Alignment:
| Q |
11 |
cagagatttcggaaatatctttagggaaagttgaaag-------gatgtaagagcctgacataaagaaacacatggcataactagaacacaatcaccacg |
103 |
Q |
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| T |
55966714 |
cagagatttcggaaatatctttagggaaagttgaaagttgcagggatgtaagagcctgacataaagaaacacatggcctaactagaccacaatcaccacg |
55966813 |
T |
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| Q |
104 |
aatagtgatttttaattgttggagttgggtattgtgggaacaaacataatctaaaatcttttggacgacttcaggcccaataatttcattacatccaaaa |
203 |
Q |
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| T |
55966814 |
aatagcgatttttaattgttggagttgggtattatgggaacaaacataatctaaaatcttttggatgacttcaggcccaataatttcattacatccaaaa |
55966913 |
T |
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| Q |
204 |
tcaaaagagttcaatgtagttgagttatcacgaagagtcaaaatctt |
250 |
Q |
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| T |
55966914 |
tcaaaagagttcaatgtagttgagttatcacgaagagtcgaaatctt |
55966960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 18083349 - 18083291
Alignment:
| Q |
110 |
gatttttaattgttggagttgggtattgtgggaacaaacataatctaaaatcttttgga |
168 |
Q |
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| T |
18083349 |
gattcttaatcgttggagtttggttttatgggaataaacataatctaaaatcttttgga |
18083291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 36617332 - 36617390
Alignment:
| Q |
110 |
gatttttaattgttggagttgggtattgtgggaacaaacataatctaaaatcttttgga |
168 |
Q |
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| T |
36617332 |
gattcttaatcgttggagtttggttttatgggaataaacataatctaaaatcttttgga |
36617390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 33844010 - 33844131
Alignment:
| Q |
48 |
gatgtaagagcctgacataaagaaacacatggcataactagaacacaatcaccacgaatagtgatttttaattgttggagttgggtattgtgggaacaaa |
147 |
Q |
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| T |
33844010 |
gatgtaagagccagacatgaagacacacatggcataaggagatcactatcacgagtaatagagattcctaattgttggatttgggtattatgggaacgaa |
33844109 |
T |
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| Q |
148 |
cataatctaaaatcttttggac |
169 |
Q |
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| T |
33844110 |
cgtaatttaaaatttttgggac |
33844131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 33840018 - 33840139
Alignment:
| Q |
48 |
gatgtaagagcctgacataaagaaacacatggcataactagaacacaatcaccacgaatagtgatttttaattgttggagttgggtattgtgggaacaaa |
147 |
Q |
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| T |
33840018 |
gatgtaagagcctgacatgaggacacacatggcataaggagatcactatcatgagaaatagagattcctaattgttggatttgtgtattatgggaacacg |
33840117 |
T |
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| Q |
148 |
cataatctaaaatcttttggac |
169 |
Q |
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| T |
33840118 |
cgtaatttaaaattttttggac |
33840139 |
T |
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