View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_140 (Length: 243)
Name: NF11278_high_140
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_140 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18701109 - 18700890
Alignment:
| Q |
1 |
gtattcctagagtattaaaagcaacaaatatgtagaacaatacacaaatctacaaaattatgcggccctttagaagactaaagtaaagtttccaagacaa |
100 |
Q |
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| T |
18701109 |
gtattgctagagtattaaaagcaacaaatatgtagaacaatacacaaatctacaaaattatgcagccctttagaagactaaagtaaagtttccaagaaaa |
18701010 |
T |
|
| Q |
101 |
tgtaaaatatagaagaaaaaattgattatcaagaaaggaaattaaaattcaacataatcctgattccttaccacaagacttcggattttgcttgtacgac |
200 |
Q |
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| T |
18701009 |
tgtaaaatatagaagaaaaaattgattatcaagaaaggaaattgaaattcaacataa-------tcctcaccacaagacttcggattttgcttgtacgac |
18700917 |
T |
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| Q |
201 |
gaacaaccacatgtgacagataagaag |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
18700916 |
gaacaaccacatgtgacagataagaag |
18700890 |
T |
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