View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_143 (Length: 243)
Name: NF11278_high_143
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_143 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 9071203 - 9070992
Alignment:
| Q |
19 |
gcttatcagaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatca |
118 |
Q |
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| T |
9071203 |
gcttatcaaaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctaaccaacctcttattaaatttcccttccaaatcgttaaggaatca |
9071104 |
T |
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| Q |
119 |
tcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatca |
218 |
Q |
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| T |
9071103 |
tcacaagat---caatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatca |
9071007 |
T |
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| Q |
219 |
aattccatgtctctg |
233 |
Q |
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| T |
9071006 |
aattccatgtctctg |
9070992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 9087427 - 9087308
Alignment:
| Q |
98 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctct |
197 |
Q |
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| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctct |
9087334 |
T |
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| Q |
198 |
ctacctcttcaggtccaatcaaattc |
223 |
Q |
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| T |
9087333 |
cttccaattcaggtccaatcaaattc |
9087308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 8862986 - 8862863
Alignment:
| Q |
95 |
cccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttc |
194 |
Q |
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| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaa---tgtactcatcct---gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcc |
8862893 |
T |
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| Q |
195 |
tctctacctcttcaggtccaatcaaattcc |
224 |
Q |
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| T |
8862892 |
tctctaccacttcaggtccaatcaaattcc |
8862863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 8866899 - 8866730
Alignment:
| Q |
48 |
agtgcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaa |
147 |
Q |
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| T |
8866899 |
agtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaa---tgtgtttatcct-- |
8866805 |
T |
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| Q |
148 |
agagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattc |
223 |
Q |
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| T |
8866804 |
-gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattc |
8866730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 9126561 - 9126479
Alignment:
| Q |
98 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgat |
189 |
Q |
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| T |
9126561 |
ttccaactcgttaaggaatcatcacaagat---caatgtgtttatcct---gagttttgcctgtattgtac---aaatcagaaaaccatgat |
9126479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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