View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_144 (Length: 242)
Name: NF11278_high_144
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_144 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 48482869 - 48482664
Alignment:
| Q |
18 |
catcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaattt |
117 |
Q |
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| T |
48482869 |
catcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaattt |
48482770 |
T |
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| Q |
118 |
gctcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgc |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482769 |
gctctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgc |
48482670 |
T |
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| Q |
218 |
tgggaa |
223 |
Q |
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|||||| |
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| T |
48482669 |
tgggaa |
48482664 |
T |
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