View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_151 (Length: 238)

Name: NF11278_high_151
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_151
NF11278_high_151
[»] scaffold2071 (1 HSPs)
scaffold2071 (56-238)||(445-624)
[»] chr2 (9 HSPs)
chr2 (70-238)||(34513330-34513496)
chr2 (56-236)||(34467681-34467866)
chr2 (70-236)||(34512987-34513155)
chr2 (57-238)||(34464141-34464323)
chr2 (138-220)||(11547851-11547933)
chr2 (196-236)||(36422282-36422322)
chr2 (204-238)||(12095449-12095483)
chr2 (57-117)||(37394206-37394267)
chr2 (57-117)||(44463878-44463939)
[»] chr8 (4 HSPs)
chr8 (56-236)||(8571378-8571557)
chr8 (65-236)||(22551181-22551350)
chr8 (88-234)||(14840703-14840838)
chr8 (152-238)||(42870988-42871074)
[»] chr1 (6 HSPs)
chr1 (59-224)||(23091529-23091692)
chr1 (76-233)||(46467324-46467477)
chr1 (70-236)||(16123462-16123634)
chr1 (57-107)||(16964887-16964937)
chr1 (170-223)||(48527722-48527774)
chr1 (151-238)||(35943303-35943390)
[»] chr3 (6 HSPs)
chr3 (67-238)||(53420490-53420660)
chr3 (173-236)||(42685051-42685114)
chr3 (56-117)||(53614038-53614099)
chr3 (56-94)||(42685150-42685188)
chr3 (57-117)||(30701522-30701583)
chr3 (201-234)||(40892333-40892366)
[»] chr4 (6 HSPs)
chr4 (136-238)||(1794586-1794688)
chr4 (194-238)||(8682707-8682751)
chr4 (152-227)||(45535228-45535303)
chr4 (196-238)||(38555180-38555222)
chr4 (194-232)||(53401385-53401423)
chr4 (57-121)||(42888594-42888659)
[»] chr7 (6 HSPs)
chr7 (70-238)||(25533361-25533525)
chr7 (132-235)||(33778933-33779036)
chr7 (57-231)||(3413712-3413889)
chr7 (67-117)||(13564015-13564065)
chr7 (77-117)||(25932951-25932991)
chr7 (195-232)||(7346089-7346126)
[»] chr5 (8 HSPs)
chr5 (137-238)||(22308641-22308742)
chr5 (136-234)||(33172724-33172824)
chr5 (196-238)||(223396-223438)
chr5 (57-117)||(16308876-16308937)
chr5 (201-238)||(20539252-20539289)
chr5 (60-93)||(22308588-22308621)
chr5 (57-117)||(27755569-27755630)
chr5 (193-238)||(40058188-40058233)
[»] scaffold0031 (2 HSPs)
scaffold0031 (136-238)||(125071-125174)
scaffold0031 (138-221)||(124157-124240)
[»] chr6 (2 HSPs)
chr6 (65-231)||(18558591-18558756)
chr6 (135-238)||(32505840-32505946)
[»] scaffold0019 (1 HSPs)
scaffold0019 (70-231)||(62909-63067)
[»] scaffold0128 (1 HSPs)
scaffold0128 (78-122)||(23047-23091)
[»] scaffold0013 (1 HSPs)
scaffold0013 (137-225)||(32758-32848)


Alignment Details
Target: scaffold2071 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 445 - 624
Alignment:
Q  56 catgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaa 155  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||||| ||||||    
T  445 catgaatgttgatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagaaaaaaa--ttagttgttgttggtactccgtaa 542  T
Q  156 gttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    ||||| ||||| ||||||||| |||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  543 gttacgataga-acgcataatccaatggtcatctttttaaaaaacagatcaaacggtttaaattaaaaaatttaataaggtct 624  T

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Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 34513330 - 34513496
Alignment:
Q  70 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacac 169  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||         ||| ||||||||||||||||||||||||||||||||||    
T  34513330 aatgttagttgaagatgatgaagattagtaaggtagaagatgaagaaagaaagaaaaaaa--ttagttgttgttggtacaccgtaagttacaatagacac 34513427  T
Q  170 gcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    ||||||| |||||  ||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  34513428 gcataatccaatgatcatctttttaaaaaacagatcaaacggtttaaattaaaaaaattaataaggtct 34513496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 34467866 - 34467681
Alignment:
Q  56 catgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnn---ttaattgttgttggtacaccg 152  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||||||||| |  |||||| ||||            ||| |||||||||||||| ||    
T  34467866 catgaatgttgatgaatatgagttaaagatgatgaagattagtaaggtagaatactaagaaagaaagaaagaaaaaaatttagttgttgttggtacatcg 34467767  T
Q  153 taagttacaatagacacgcataattcaatggccatc--tttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    |||||||||||||||||  ||||| || ||| ||||  |||| |||||| | ||||||||||||||||||||||| ||||||||||    
T  34467766 taagttacaatagacacatataatccagtggtcatcattttaaaaaaaaaatatcaaacagtttaaattaaaaaacttaataaggt 34467681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 34513155 - 34512987
Alignment:
Q  70 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacac 169  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||         ||| ||||||||||||||||||||||| |||||||||     
T  34513155 aatgttagttgaagatgatgaaaattagtaaggtagaagatgaagaaagaaag--aaaaatattagttgttgttggtacaccgtaagttgcaatagacat 34513058  T
Q  170 gcataattcaatggccatctttat----aaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    ||| |||||||  | ||| ||| |    |||||| | |||||| |||||||||||||||||||||||||||    
T  34513057 gcacaattcaaatgtcattttttttttaaaaaaacaaatcaaatagtttaaattaaaaaatttaataaggt 34512987  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 34464323 - 34464141
Alignment:
Q  57 atgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaag-nnnnnnnnnttaattgttgttggtacaccgtaa 155  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||          ||| ||| ||||||||||| ||||    
T  34464323 atgaatgttgatgaatgtgagttgaagataatggagattagtaaggtagaagatgaataaagaaagaaaaaaaaaattagttgatgttggtacactgtaa 34464224  T
Q  156 gttacaatagacacgcataattcaatggccatc-tttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||||||| |||||  |||||  | ||   ||| |||| |||||  |||||||||||||||||||||||||| |||||||||||    
T  34464223 gttacaat-gacacatataatctagtgataatcatttaaaaaaatcagatcaaacagtttaaattaaaaaatctaataaggtct 34464141  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 11547933 - 11547851
Alignment:
Q  138 gttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaatta 220  Q
    ||||||||||||| |||||||||||||||||| | ||||   |||| ||||||| |  |||| ||||||||| ||||||||||    
T  11547933 gttgttggtacactgtaagttacaatagacacacgtaatctcatggtcatctttttggaaaacagatcaaacggtttaaatta 11547851  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 36422322 - 36422282
Alignment:
Q  196 aaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  36422322 aaaaaagatcaaagagtttaaattaaaaaatttaataaggt 36422282  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 12095483 - 12095449
Alignment:
Q  204 tcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  12095483 tcaaacagttaaaattaaaaaatttaataaggtct 12095449  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 37394267 - 37394206
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||| ||| ||||||||||| ||||||||||||||||  || |||| ||||||||||||||    
T  37394267 atgaaggttgatgaatgtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaa 37394206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 44463939 - 44463878
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||||| ||||| ||||| ||||||||||||||||  || |||| ||||||||||||||    
T  44463939 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaa 44463878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 8571378 - 8571557
Alignment:
Q  56 catgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaa 155  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||          ||| |||||||||||||| |||||    
T  8571378 catgaatgttgatgaatgtgagttgaagatgatgaagattattaaggtagaagatgaagaaagaaa--taaaagaattagttgttgttggtacatcgtaa 8571475  T
Q  156 gttacaatagacacgcataattcaatggcca-tctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    ||||||||||||||| ||||| |||||| || ||||| ||| ||| |||||||||||||||||||||||| |||||||||||    
T  8571476 gttacaatagacacgtataatccaatggtcattctttttaagaaacagatcaaacagtttaaattaaaaagtttaataaggt 8571557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 22551350 - 22551181
Alignment:
Q  65 tcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaata 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||         ||| |||||||||||  ||  ||||||||||||    
T  22551350 tcatgaatgtgagttaaagatgatgaagattagtaaggtagaagatgaagaaagaaagaacaaaa--ttagttgttgttggtgaactttaagttacaata 22551253  T
Q  165 gacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    |||| ||| |||||||| | ||||||| ||||||| ||||||||| |||||||||| |||||||||||||||    
T  22551252 gacatgcaaaattcaattgtcatctttttaaaaaacagatcaaacggtttaaattacaaaatttaataaggt 22551181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 14840703 - 14840838
Alignment:
Q  88 tgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacacgcataattcaatggccat 187  Q
    |||||||||||||||||||||||||||||| ||           ||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||    
T  14840703 tgaagattagtaaggtagaagatgaagaaagaa-----------ttagttgttgttgatgcaccgtaagttacaatagacacgcataattcaatggtcat 14840791  T
Q  188 ctttataaaaaagagatcaaacagtttaaattaaaaaatttaataag 234  Q
    |||| || |||| | ||||||| ||||||||||||||||||||||||    
T  14840792 ctttttagaaaacatatcaaacggtttaaattaaaaaatttaataag 14840838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 42871074 - 42870988
Alignment:
Q  152 gtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    ||||| || |||| ||| || ||||||||||| |||| || ||||| | ||||||||| |||||||||| |||||||||||||||||    
T  42871074 gtaagataaaatacacatgcgtaattcaatggtcatccttttaaaacacagatcaaacggtttaaattacaaaatttaataaggtct 42870988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 23091692 - 23091529
Alignment:
Q  59 gaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagtt 158  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||          ||| |||||||||||||| ||||||||    
T  23091692 gaatgttgatgaatgtgagttgaagatgatgaagattattaaggtagaagatgaagaaagaaa--taaaagaattagttgttgttggtacatcgtaagtt 23091595  T
Q  159 acaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaa 224  Q
    |||||||||||| |||||||||||| ||| ||| | ||||| ||||||||||||||||| ||||||    
T  23091594 acaatagacacgtataattcaatggtcattttttttaaaaatagatcaaacagtttaaaataaaaa 23091529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 46467477 - 46467324
Alignment:
Q  76 agttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacacgcataa 175  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||         ||| ||||||||||| ||||||||||||||||||||||| ||||    
T  46467477 agttgaagatgatgaagattagtaaggtagaagatgaagaaagaaagaaagaa---ttagttgttgttggtgcaccgtaagttacaatagacacgtataa 46467381  T
Q  176 ttcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataa 233  Q
    |||||||| ||||||| || |||| | ||||||| |||||||||| ||||||||||||    
T  46467380 ttcaatggtcatctttttagaaaatatatcaaacggtttaaatta-aaaatttaataa 46467324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 16123634 - 16123462
Alignment:
Q  70 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaag--nnnnnnnnnttaattgttgttggtacaccgtaagttacaatagac 167  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||| ||||           |||||||||||||||||| |||| |||||||||||     
T  16123634 aatgtgagttgaagatgatgaagatcggtaaggtagaagacgaagaaagaaagaaaagagaaaattaattgttgttggtacatcgtacgttacaatagat 16123535  T
Q  168 acgcataattcaatggccatcttt----ataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    ||||| ||| |||||  |||||||    | |||||| |||| |||  ||||||| |||||| |||||||||||    
T  16123534 acgcagaatccaatgaacatcttttaaaaaaaaaaacagattaaagggtttaaactaaaaattttaataaggt 16123462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 16964887 - 16964937
Alignment:
Q  57 atgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaa 107  Q
    |||| |||| ||| |||||||||||||||||||||||||  ||||||||||    
T  16964887 atgagtgttgatggatgtgagttgaagatgatgaagatttataaggtagaa 16964937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 48527774 - 48527722
Alignment:
Q  170 gcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaa 223  Q
    ||||||| |||||| |||| || ||||||| |||||||||||||||||||||||    
T  48527774 gcataatccaatggtcatcatt-taaaaaaaagatcaaacagtttaaattaaaa 48527722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 35943303 - 35943390
Alignment:
Q  151 cgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagttt-aaattaaaaaatttaataaggtct 238  Q
    |||||| || |||||||  || ||||||||||| |||| ||  |||||| ||||||||| |||| ||| ||||||||||||||||||||    
T  35943303 cgtaagataaaatagacctgcgtaattcaatggtcatcctttcaaaaaa-agatcaaacggttttaaaataaaaaatttaataaggtct 35943390  T

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Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 53420660 - 53420490
Alignment:
Q  67 atgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaataga 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||          ||| |||||||||||||| ||||||||||||||||    
T  53420660 atgaatgtgagttgaagatgatgaagattattaaggtagaagatgaagaaagaaa--taaaagaattagttgttgttggtacatcgtaagttacaataga 53420563  T
Q  167 cacgcataattcaatggcca-tctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||| |||||| ||||| || | ||| ||| ||| |||||||||||||||||||||||| |||||||||||||    
T  53420562 cacgtataatttaatggtcattttttttaagaaacagatcaaacagtttaaattaaaaagtttaataaggtct 53420490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 42685114 - 42685051
Alignment:
Q  173 taattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    ||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  42685114 taattcaatggtcatctttttaaaaaacagatcaaacggtttaaattaaaaaatttaataaggt 42685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 53614038 - 53614099
Alignment:
Q  56 catgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||| || |||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  53614038 catgaatattgatgagtgtgagttgaagatgatgaagattattaaaggagaagatgaagaaa 53614099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 42685188 - 42685150
Alignment:
Q  56 catgaatgttcatgaatgtgagttgaagatgatgaagat 94  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  42685188 catgaatgttgatgaatgtgagttgaagatgatgaagat 42685150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 30701522 - 30701583
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||||| ||||| ||||| ||||||||||||||||  || |||| ||||||||||||||    
T  30701522 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaa 30701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 40892366 - 40892333
Alignment:
Q  201 agatcaaacagtttaaattaaaaaatttaataag 234  Q
    ||||||||||||| ||||||||||||||||||||    
T  40892366 agatcaaacagttaaaattaaaaaatttaataag 40892333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 1794688 - 1794586
Alignment:
Q  136 ttgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataagg 235  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||  |||||||| |||||||||||||||||||||||||    
T  1794688 ttgttgttgatacaccgtaagttacaatagacacgcataattcaatggtcatctttttaaaaaattgatcaaacggtttaaattaaaaaatttaataagg 1794589  T
Q  236 tct 238  Q
    |||    
T  1794588 tct 1794586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 8682707 - 8682751
Alignment:
Q  194 aaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||||| |||||||||  |||||||||||||||||||||||||||    
T  8682707 aaaaaatagatcaaacgatttaaattaaaaaatttaataaggtct 8682751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 45535303 - 45535228
Alignment:
Q  152 gtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatt 227  Q
    ||||| || ||||||||||| |||| |||| |  ||| || |||| || |||||||||||||||||||||||||||    
T  45535303 gtaagataaaatagacacgcgtaatccaatagttatccttttaaataaaagatcaaacagtttaaattaaaaaatt 45535228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 38555180 - 38555222
Alignment:
Q  196 aaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||    
T  38555180 aaaaaagatcaaacggtttaaattaaaaaatttaataaagtct 38555222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 53401385 - 53401423
Alignment:
Q  194 aaaaaagagatcaaacagtttaaattaaaaaatttaata 232  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  53401385 aaaaaaaagatcaaacagttaaaattaaaaaatttaata 53401423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 42888659 - 42888594
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaataaa 121  Q
    ||||||||| ||||| ||||| ||||||||||| ||||  || |||| ||||||||||||||||||    
T  42888659 atgaatgttgatgaaggtgaggttgaagatgataaagaagaggaaggaagaagatgaagaaataaa 42888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 25533525 - 25533361
Alignment:
Q  70 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacac 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||   ||||||||||||| |||||||| ||||||||     
T  25533525 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaagaaagggaaaaaaatta---gttgttggtacacggtaagttataatagacat 25533429  T
Q  170 gcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||||||  ||||| ||||||| ||||||| | ||||||| ||||||||| ||| ||||||||||||||    
T  25533428 gcataatcaaatggtcatctttttaaaaaatatatcaaacggtttaaatt-aaagatttaataaggtct 25533361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 33778933 - 33779036
Alignment:
Q  132 ttaattgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaat 231  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||  | ||| ||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  33778933 ttaattgttgttggtacacagtaagttacaatagacacgtataatctagtggtcatatttttaaaaagtagatcaaacagtttaaattaaaaaatttaat 33779032  T
Q  232 aagg 235  Q
    ||||    
T  33779033 aagg 33779036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 3413889 - 3413712
Alignment:
Q  57 atgaatgttcatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnn---ttaattgttgttggtacaccgt 153  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| || ||||            |||  |||||||||||||||||    
T  3413889 atgaatgttgatgaatgggagttgaagatgatgaagattagtaagatagaagatgaaggaagaaagaaagaaaaaaaattaggtgttgttggtacaccgt 3413790  T
Q  154 aagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaat 231  Q
    ||||||||| |||||||||||||||||||   |||||| ||  ||| ||||||||| ||| ||||| ||||| |||||    
T  3413789 aagttacaacagacacgcataattcaatgatgatctttttagcaaacagatcaaacggttaaaatttaaaaaattaat 3413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 13564015 - 13564065
Alignment:
Q  67 atgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    |||||||||||||||||||||||||||||| ||| |  |||||||||||||    
T  13564015 atgaatgtgagttgaagatgatgaagattattaaaggggaagatgaagaaa 13564065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 25932991 - 25932951
Alignment:
Q  77 gttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  25932991 gttgaagatgatgaagaatagaaaggtagaagatgaagaaa 25932951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 7346126 - 7346089
Alignment:
Q  195 aaaaagagatcaaacagtttaaattaaaaaatttaata 232  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  7346126 aaaaaaagatcaaacagttaaaattaaaaaatttaata 7346089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 22308641 - 22308742
Alignment:
Q  137 tgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaataaggt 236  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||| ||||||| ||||||||  ||||| ||||||||||||||||| ||    
T  22308641 tgttgttggtacaccgtaagtaacaatagacatgcataatccaatggtcatctttttaaaaaacagatcaaatggtttacattaaaaaatttaataatgt 22308740  T
Q  237 ct 238  Q
    ||    
T  22308741 ct 22308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 33172824 - 33172724
Alignment:
Q  136 ttgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatc-tttataaaaaagagatcaaacagtttaaa-ttaaaaaatttaataa 233  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| |||| |||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  33172824 ttgttgttggtacaccgtaagttaaaatagacacgcataatctaatggtcatcttttaaaaaaaatagatcaaacggtttaaacttaaaaaatttaataa 33172725  T
Q  234 g 234  Q
    |    
T  33172724 g 33172724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 223438 - 223396
Alignment:
Q  196 aaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||    
T  223438 aaaaaagatcaaacggtttaaattaaaaaatttaataaagtct 223396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 16308937 - 16308876
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||||| ||||| ||||| ||||||||||||||||  || |||| ||||||||||||||    
T  16308937 atgaatgttgatgaaggtgaggttgaagatgatgaagaagagaaaggaagaagatgaagaaa 16308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 20539252 - 20539289
Alignment:
Q  201 agatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  20539252 agatcaaacggtttaaattaaaaaaattaataaggtct 20539289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 22308588 - 22308621
Alignment:
Q  60 aatgttcatgaatgtgagttgaagatgatgaaga 93  Q
    |||||| |||||||||||||||||||||||||||    
T  22308588 aatgttgatgaatgtgagttgaagatgatgaaga 22308621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 27755630 - 27755569
Alignment:
Q  57 atgaatgttcatgaatgtgag-ttgaagatgatgaagattagtaaggtagaagatgaagaaa 117  Q
    ||||||||| ||||| ||||| ||||||||||||||||  || |||| ||||||||||||||    
T  27755630 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaa 27755569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 40058233 - 40058188
Alignment:
Q  193 taaaaaagagatcaaacagtttaaattaaaaaatttaataaggtct 238  Q
    ||||||| ||||||||||||| ||| ||||| ||||||||||||||    
T  40058233 taaaaaaaagatcaaacagttaaaaataaaagatttaataaggtct 40058188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 125071 - 125174
Alignment:
Q  136 ttgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaatt-aaaaaatttaataag 234  Q
    ||||||||  ||||| ||||||||||||||||||||||||| |||||| ||||||| |||||||  |||||||  ||||||||| |||||||||||||||    
T  125071 ttgttgtttatacactgtaagttacaatagacacgcataatccaatggtcatctttttaaaaaactgatcaaagggtttaaattaaaaaaatttaataag 125170  T
Q  235 gtct 238  Q
    ||||    
T  125171 gtct 125174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 124240 - 124157
Alignment:
Q  138 gttgttggtacaccgtaagttacaatagacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaa 221  Q
    ||||||||||||| ||||||||||||||||| ||||||| | ||||  |||||| ||||||| |||||||||  ||||||||||    
T  124240 gttgttggtacactgtaagttacaatagacatgcataatcctatggttatctttttaaaaaatagatcaaacgatttaaattaa 124157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 18558756 - 18558591
Alignment:
Q  65 tcatgaatgtga-gttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaat 163  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||||||||  |||         ||| || |||||||||| ||||||||||||||    
T  18558756 tcatgaatgtgaagttcaagatgatgaagaatagtaaggtagaagatgaagaaaggaagaaaataa--ttagtttttgttggtacgccgtaagttacaat 18558659  T
Q  164 agacacgcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaat 231  Q
    ||| || ||||||||||| | || |||| ||||| | ||||||||  ||||||||||||||| |||||    
T  18558658 agaaacacataattcaatagtcacctttttaaaatatagatcaaatggtttaaattaaaaaagttaat 18558591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 32505946 - 32505840
Alignment:
Q  135 attgttgttggtacaccgtaagttacaatagacacgcataattcaatgg-ccatctttat-aaaaaagagatcaaacagtttaaa-ttaaaaaatttaat 231  Q
    ||||||||||||||||||||||||| ||||||||||||||||  ||||| | |||||| | |||||| ||||||||| ||||||| ||||||||||||||    
T  32505946 attgttgttggtacaccgtaagttaaaatagacacgcataatctaatggtctatctttttaaaaaaatagatcaaacggtttaaacttaaaaaatttaat 32505847  T
Q  232 aaggtct 238  Q
    |||||||    
T  32505846 aaggtct 32505840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 62909 - 63067
Alignment:
Q  70 aatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaataaagnnnnnnnnnttaattgttgttggtacaccgtaagttacaatagacac 169  Q
    |||| ||||||||||||||||| ||||||||| |||||||| |||||| |||          |||  |||||||||||||||||||||||||| | ||||    
T  62909 aatgggagttgaagatgatgaatattagtaagatagaagataaagaaagaaa---aaaaaaattaggtgttgttggtacaccgtaagttacaacaaacac 63005  T
Q  170 gcataattcaatggccatctttataaaaaagagatcaaacagtttaaattaaaaaatttaat 231  Q
    |||||||||||| |  |||||| ||  ||| ||||||||| ||| ||||| ||||| |||||    
T  63006 gcataattcaattgtgatctttttagcaaacagatcaaacggttaaaatttaaaaaattaat 63067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 23047 - 23091
Alignment:
Q  78 ttgaagatgatgaagattagtaaggtagaagatgaagaaataaag 122  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||    
T  23047 ttgaagatgatgaagattaataaggttgaagatgaagaaagaaag 23091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 32848 - 32758
Alignment:
Q  137 tgttgttggtacaccgtaagttacaatagacacgcataattcaatggccatcttt--ataaaaaagagatcaaacagtttaaattaaaaaa 225  Q
    ||||||||||  |||||||| |||| |||||| |||| ||  ||||| | |||||  |||||||| ||||||||| |||||||||||||||    
T  32848 tgttgttggtttaccgtaagatacagtagacatgcatgatctaatggtcctcttttaataaaaaaaagatcaaacggtttaaattaaaaaa 32758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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