View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_16 (Length: 601)
Name: NF11278_high_16
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_16 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 13767 - 14078
Alignment:
| Q |
19 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
118 |
Q |
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| T |
13767 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
13866 |
T |
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| Q |
119 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13867 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
13966 |
T |
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| Q |
219 |
atacaacctcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtaca |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967 |
atacaacttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtaca |
14066 |
T |
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| Q |
319 |
acttccatccag |
330 |
Q |
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|||||||||||| |
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| T |
14067 |
acttccatccag |
14078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 396 - 582
Target Start/End: Original strand, 14144 - 14330
Alignment:
| Q |
396 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
495 |
Q |
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| T |
14144 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
14243 |
T |
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| Q |
496 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttct |
582 |
Q |
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| T |
14244 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttct |
14330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 42933004 - 42932693
Alignment:
| Q |
19 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
118 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933004 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
42932905 |
T |
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| Q |
119 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932904 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
42932805 |
T |
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| Q |
219 |
atacaacctcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtaca |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932804 |
atacaacttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtaca |
42932705 |
T |
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| Q |
319 |
acttccatccag |
330 |
Q |
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|||||||||||| |
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| T |
42932704 |
acttccatccag |
42932693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 396 - 582
Target Start/End: Complemental strand, 42932627 - 42932441
Alignment:
| Q |
396 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932627 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
42932528 |
T |
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| Q |
496 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttct |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
42932527 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttct |
42932441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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