View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_18 (Length: 592)
Name: NF11278_high_18
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 37877111 - 37876681
Alignment:
| Q |
14 |
agaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtag |
113 |
Q |
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| T |
37877111 |
agaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtag |
37877012 |
T |
|
| Q |
114 |
atatgaggaaacaggattagaattttatttgtaggttacacatgctgct---tctcggagttacattgtataaaatagtaccagcagtcaaataatatgg |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37877011 |
atatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtataaa-tagtaccagcagtcaaataatatgg |
37876913 |
T |
|
| Q |
211 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatggggtaaggtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37876912 |
gtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatggggtaaggtt |
37876813 |
T |
|
| Q |
309 |
tccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatgattgttt |
408 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
37876812 |
tccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatgattgttt |
37876713 |
T |
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| Q |
409 |
gtgtcattatttgttaatagacttagagtgat |
440 |
Q |
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| T |
37876712 |
gtgccattatttgttaatagacttagagtgat |
37876681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 455 - 589
Target Start/End: Complemental strand, 37876636 - 37876502
Alignment:
| Q |
455 |
tgcaagaatattgattcgttactcctttgactcattttaaaatgggaaatttggcacaaaatgtttattataaagaaggctttgagaaaagggagaacat |
554 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876636 |
tgcaagaatattgatttgttactcctttgactcattttaaaatgggaaatttggcacaaaatgtttattataaagaaggctttgagaaaagggagaacat |
37876537 |
T |
|
| Q |
555 |
gagagtactgaaatagagcagagaaaagaaagcaa |
589 |
Q |
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| T |
37876536 |
gagagtactgaaatagagcagagaaaagaaagcaa |
37876502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Original strand, 23894570 - 23895000
Alignment:
| Q |
14 |
agaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtag |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894570 |
agaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtag |
23894669 |
T |
|
| Q |
114 |
atatgaggaaacaggattagaattttatttgtaggttacacatgctgct---tctcggagttacattgtataaaatagtaccagcagtcaaataatatgg |
210 |
Q |
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| T |
23894670 |
atatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtataaa-tagtaccagcagtcaaataatatgg |
23894768 |
T |
|
| Q |
211 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatggggtaaggtt |
308 |
Q |
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| T |
23894769 |
gtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatggggtaaggtt |
23894868 |
T |
|
| Q |
309 |
tccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatgattgttt |
408 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
23894869 |
tccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatgattgttt |
23894968 |
T |
|
| Q |
409 |
gtgtcattatttgttaatagacttagagtgat |
440 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
23894969 |
gtgccattatttgttaatagacttagagtgat |
23895000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 455 - 589
Target Start/End: Original strand, 23895045 - 23895179
Alignment:
| Q |
455 |
tgcaagaatattgattcgttactcctttgactcattttaaaatgggaaatttggcacaaaatgtttattataaagaaggctttgagaaaagggagaacat |
554 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895045 |
tgcaagaatattgatttgttactcctttgactcattttaaaatgggaaatttggcacaaaatgtttattataaagaaggctttgagaaaagggagaacat |
23895144 |
T |
|
| Q |
555 |
gagagtactgaaatagagcagagaaaagaaagcaa |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
23895145 |
gagagtactgaaatagagcagagaaaagaaagcaa |
23895179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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