View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_20 (Length: 579)
Name: NF11278_high_20
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 50049144 - 50049469
Alignment:
| Q |
17 |
attgacatctctctgaaagctaactcgaatggagatgcccatgctgagtacaccaccaataccactaggaacgtttgccacaatctatatcacaaacttg |
116 |
Q |
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| T |
50049144 |
attgacatctctctgaaagctaactcgaatggagatgcccatgctgagtacaccaccaataccactaggaacgtttgccacaatctatatcacaaacttg |
50049243 |
T |
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| Q |
117 |
tcattccacagcacaggatataaacaaataaattgtattaaggcaaattaaatatgtatgtacctatatctgcgatcatagggagcaataacatattttt |
216 |
Q |
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| T |
50049244 |
tcattccacagcacaggatataaacaaataaattgtattaaggcaaattaaatatgtatgtacctatatctgcgatcatagggagcaataacatattttt |
50049343 |
T |
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| Q |
217 |
taaggtcgaagtaaccttcatcaggattagtgccaaatgctggtaaaagactgctagaaattgaggccaagttccttatttcgccacttgaacgtcttct |
316 |
Q |
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| T |
50049344 |
ttaggtcgaagtaaccttcatcaggattagtgccaaatgctggtaaaagactgctagaaattgaggccaagttccttatttcgccacttgaacgtcttct |
50049443 |
T |
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| Q |
317 |
aactagagatggcaacgtcatttctt |
342 |
Q |
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| T |
50049444 |
aactagagatggcaacgtcatttctt |
50049469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 366 - 564
Target Start/End: Original strand, 50049491 - 50049686
Alignment:
| Q |
366 |
ttaacacttcttgttatctacgttgttatacaagtggaatacatatatgcataccaccacatacggcaaggctttgtctaatttatttaattatcaataa |
465 |
Q |
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| T |
50049491 |
ttaacacttcttgttatctacgttgttatacaagtggaatacatatatgcatacca---catacggcaaggctttgtctaatttatttaattatcaataa |
50049587 |
T |
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| Q |
466 |
ttctttctctaattagtattttattaatcaataattcaacttcttatatgaatttcaacgaacatttaagtttttctattataagaagtcaactctgtg |
564 |
Q |
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| T |
50049588 |
ttctttctctaattagtattttattaatcaataattcaacttcttatatgaatttcaacgaacatttaagtttttctattataagaagtcaactctgtg |
50049686 |
T |
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