View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_high_22 (Length: 568)
Name: NF11278_high_22
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 7078699 - 7078253
Alignment:
| Q |
1 |
ccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatgtcctcgacgctttgtcgcgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7078699 |
ccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatgtcctcgaagctttgtcgcgaaag |
7078600 |
T |
|
| Q |
101 |
agaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatcattcatttcgttggttatattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7078599 |
agaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatcattcatttcattggttatattct |
7078500 |
T |
|
| Q |
201 |
ctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatggtaggattctaatgccagttttctacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7078499 |
ctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctacca |
7078400 |
T |
|
| Q |
301 |
agtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7078399 |
agtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggttctaaggtggaga |
7078300 |
T |
|
| Q |
401 |
tctgctttgaagcaatctgctaatatttctggatttgattcatcaca |
447 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7078299 |
tctgctttgaagcaatctgcaaatatttctggatttgattcatcaca |
7078253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 7028529 - 7028974
Alignment:
| Q |
1 |
ccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatgtcctcgacgctttgtcgcgaaag |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7028529 |
ccctgcacctcagataaaatatgatgtctttgttagctttagaggtagtgacattcgcaaaaatttccttagccatgtcctcgacgctttgtcgcgaaag |
7028628 |
T |
|
| Q |
101 |
agaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatcattcatttcgttggttatattct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| | |
|
|
| T |
7028629 |
ggaatcattgttttttctgacaaaaagctaataacaggagacgaattatcagcaattcaaagagcaattgaaaaatcattgatttcattggtcatatttt |
7028728 |
T |
|
| Q |
201 |
ctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatggtaggattctaatgccagttttctacca |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||| | || ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
7028729 |
ctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctacca |
7028828 |
T |
|
| Q |
301 |
agtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggaga |
400 |
Q |
| |
|
|||| | ||| ||| |||| || | |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
7028829 |
agtatatccctcagatgtacggcatcaaaatgggacttatagagatgcttttgctcaacatgaacaaaagtatagttcctacaaggtgctaagctggaga |
7028928 |
T |
|
| Q |
401 |
tctgctttgaagcaatctgctaatatttctggatttgattcatcac |
446 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7028929 |
tctgctttgaagcaatctgctaatatgtctggatttgattcatcac |
7028974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 7035231 - 7035677
Alignment:
| Q |
1 |
ccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatgtcctcgacgctttgtcgcgaaag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || || ||||| ||||||||| | |||||||||||||| || || ||||| ||||||||| |
|
|
| T |
7035231 |
ccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaag |
7035330 |
T |
|
| Q |
101 |
agaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatcattcatttcgttggttatattct |
200 |
Q |
| |
|
| ||| || || ||||||||||| |||||| | |||||| ||| |||||| | |||| | |||||||||||||||||| ||||| ||||| ||||| | |
|
|
| T |
7035331 |
aaaattgtagtcttttctgacaagaagcttcgaggaggagacgaaatatcagaacttcatacagcaattgaaaaatcattgatttcattggtcatatttt |
7035430 |
T |
|
| Q |
201 |
ctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatggtaggattctaatgccagttttctacca |
300 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||| | || ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
7035431 |
caccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagagcaaattatggcaggattctattgccagttttctacca |
7035530 |
T |
|
| Q |
301 |
agtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggaga |
400 |
Q |
| |
|
|||||||||| ||| |||| || | |||||||||| ||||||||||||||||||||||||||||||||| |||| || | ||||||||||| |||||| |
|
|
| T |
7035531 |
agtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaacatgaacaaaagtataatttgaataaggtgctaagttggaga |
7035630 |
T |
|
| Q |
401 |
tctgctttgaagcaatctgctaatatttctggatttgattcatcaca |
447 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
7035631 |
tatgctttgaagcaatctgccaatatgtctggatttgattcatcaca |
7035677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 7020934 - 7021367
Alignment:
| Q |
12 |
agataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatgtcctcgacgctttgtcgcgaaagagaatcgttgt |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || || | |||| | | ||||||||||||||||| | ||||| ||||||||| ||| ||| |
|
|
| T |
7020934 |
agataaaacatgatgtctttgttagcttcaggggtgaggatacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgt |
7021033 |
T |
|
| Q |
112 |
tttttctgacaaaaagcttaaaacaggagatgaattatcagcaa---ttcaaagagcaattgaaaaatcattcatttcgttggttatattctctccaaac |
208 |
Q |
| |
|
||||||||||| || ||| || |||||||||| ||||| ||| || | |||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7021034 |
attttctgacaagaaacttgaagaaggagatgaaatatcaccaaaacttaatgaagcaattgaaaaatcattcattcatttggtcatattctctccaaac |
7021133 |
T |
|
| Q |
209 |
tttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatggtaggattctaatgccagttttctaccaagtagagc |
308 |
Q |
| |
|
||| ||| |||| |||||||| |||| |||||||||||||||||||| || | || |||||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
7021134 |
ttttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgcagagcaaaatatgataggattctattgccagttttctaccaagtagatc |
7021233 |
T |
|
| Q |
309 |
ccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggagatctgcttt |
408 |
Q |
| |
|
| |||| ||| | | |||| ||| ||||| ||||||||||| ||||| || |||||||| |||||| |||||||| || ||||||| |||||| |
|
|
| T |
7021234 |
ctacagaagtacgacatcaaactggtgcttataaagatgcttttgttcaacttggacaaaattttagttccgacaaggtggaaaagtggagacatgcttt |
7021333 |
T |
|
| Q |
409 |
gaagcaatctgctaatatttctggatttgattca |
442 |
Q |
| |
|
|| ||||||| ||||||||||||||| ||||| |
|
|
| T |
7021334 |
gacaaaatctgccaatatttctggatttcattca |
7021367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 7078187 - 7078132
Alignment:
| Q |
512 |
gattgaacaaattaaaaaagttaatgtgtctcttcatct-tttctctgcttctcca |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
7078187 |
gattgaacaaattaaaaaagttaatgtgtctcttcatctctttttctgcttctcca |
7078132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 369
Target Start/End: Complemental strand, 7070013 - 7069807
Alignment:
| Q |
163 |
agcaattgaaaaatcattcatttcgttggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaa |
262 |
Q |
| |
|
||||||||||| ||| | ||||| || || |||||||||| ||||| ||| ||||||| ||||||| |||| ||||| || ||| | ||||| |||| | |
|
|
| T |
7070013 |
agcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgtttggatgagctggtcaaagttgttgactgtaga |
7069914 |
T |
|
| Q |
263 |
gaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatg |
362 |
Q |
| |
|
|| ||| |||| | ||| || |||| ||||||||| |||| || |||||| |||| ||| | |||||||| | |||| |||||| |||| | |||||| |
|
|
| T |
7069913 |
gagaaagatggaaacattttattgcctgttttctacaaagttgatcccacaattgtgaggcatcaaaatggaacttatgcagatgcatttgttgaacatg |
7069814 |
T |
|
| Q |
363 |
aacaaaa |
369 |
Q |
| |
|
||||||| |
|
|
| T |
7069813 |
aacaaaa |
7069807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 369
Target Start/End: Complemental strand, 7087048 - 7086873
Alignment:
| Q |
194 |
atattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatggtaggattctaatgccagttt |
293 |
Q |
| |
|
|||||||||| ||||| ||| |||||| | |||||| |||| |||||||| ||||| |||||||||| ||| ||| |||| |||| || |||| |||| |
|
|
| T |
7087048 |
atattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgttt |
7086949 |
T |
|
| Q |
294 |
tctaccaagtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaa |
369 |
Q |
| |
|
| ||| |||| || || |||||||| ||| | || || |||| |||| | |||| ||||| ||||||||||||| |
|
|
| T |
7086948 |
tttacaaagttgaccctacagttgtgaggcatcagaaggggacttatgcaaatgcatttgcagaacatgaacaaaa |
7086873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 7100460 - 7100407
Alignment:
| Q |
394 |
gtggagatctgctttgaagcaatctgctaatatttctggatttgattcatcaca |
447 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||| |
|
|
| T |
7100460 |
gtggagatctgctttgaagaaatctgcagatatctctggttttcattcatcaca |
7100407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 4003367 - 4003257
Alignment:
| Q |
163 |
agcaattgaaaaatcattcatttcgttggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaa |
262 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||| ||||| ||| |||||| |||||||| | || || |||||||||||| ||||||| ||| |
|
|
| T |
4003367 |
agcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgcaaa |
4003268 |
T |
|
| Q |
263 |
gaaaaatatgg |
273 |
Q |
| |
|
|| |||||||| |
|
|
| T |
4003267 |
gagaaatatgg |
4003257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 3916008 - 3916105
Alignment:
| Q |
175 |
atcattcatttcgttggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatg |
272 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||| ||| | |||| |||||||| | | || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
3916008 |
atcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtgtaaagagaaatatg |
3916105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 3812040 - 3811948
Alignment:
| Q |
181 |
catttcgttggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatgg |
273 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||| |||||| |||||||| | || ||||||||||||||| ||||||| ||||| | |||||| |
|
|
| T |
3812040 |
catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatatgg |
3811948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 3821613 - 3821521
Alignment:
| Q |
181 |
catttcgttggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatgg |
273 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||| |||||| |||||||| | || ||||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
3821613 |
catttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatatgg |
3821521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 3927044 - 3927099
Alignment:
| Q |
217 |
ttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaaagaaaaatatg |
272 |
Q |
| |
|
|||| |||||||| | || || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
3927044 |
ttcacattggtgtttagaagaacttgtgaaaatagttgagtgtaaagagaaatatg |
3927099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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