View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_23 (Length: 567)
Name: NF11278_high_23
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 40863759 - 40864257
Alignment:
| Q |
17 |
ataagtatatatcatagatgcttnnnnnnngtatatcagagatatattaaaataaaataccgaattaattatcttagtaatcttaagtaaatgaatatat |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40863759 |
ataagtatatatcatagatgcttaaaaaaagtatatcagagatatattaaaataaaataccgaattaattatcttagtaatcttaagtaaatgaataaat |
40863858 |
T |
|
| Q |
117 |
atacattacctcctttaacttttagaagaaaatcgaaatgctttgaaatgatcgaatataataccaatatgtttaaatccgcttagaactaaaccgaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
40863859 |
atacattacctcctttaacttttagaagaaaatcgaaatgctttgaaatgatcgaatataataccaatatgtttaaatccgcttagaattaaattgaaat |
40863958 |
T |
|
| Q |
217 |
gacataactcacttacgatcattcttacactttaatccacttgatcttctggaacctttgaactatgaagtgtgttcctctgaatgtatcatattcgatt |
316 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40863959 |
gacataactcacttacgatcattcttaaactttaatcaacttgatctcctggaacctttgaactatgaagtgtgttcctctgaatgtatcatatttgatt |
40864058 |
T |
|
| Q |
317 |
ctctttgatgttaattttagtaggttagcttaacttcttt--nnnnnnnnntatcaatctcacacttttacaaagagatctgnnnnnnnnatatttattt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||| |
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| T |
40864059 |
ctctttgatgttaattttagtaggttagcttaacttctttaaaaaaaaaaaaatcaatctcacacttttacaaagaggtctgtgttttttatttttattt |
40864158 |
T |
|
| Q |
415 |
tgaattggagggagagttaatttgataaatgaacagaatatttccaccttttcttctttctannnnnnnncttctaccgaataacaaaatcagttcata |
513 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
40864159 |
tgaattctagggagagttaatttgataaatgaacagaatatttccaccttttcttctttctattttttttcttctaccaaataacaaaatcaattcata |
40864257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 513
Target Start/End: Original strand, 40864493 - 40864575
Alignment:
| Q |
430 |
gttaatttgataaatgaacagaatatttccaccttttcttctttctannnnnnnncttctaccgaataacaaaatcagttcata |
513 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
40864493 |
gttaatttgataaatgaacacaatatttctaccttttcttctttcta-tttttttcttctaccaaataacaaaatcagttcata |
40864575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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