View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_24 (Length: 557)
Name: NF11278_high_24
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 34776489 - 34776207
Alignment:
| Q |
19 |
actatagactatttggtttgattatttatcctaattgtttgtatatttaaatttctaaatgttttaacaatgtaatatagcaaccatgcatcgagtatat |
118 |
Q |
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| T |
34776489 |
actatagactatttggtttgattatttttcctaattgtttgtatatttaaatttctaaatgttttaacaatgtaatatagcaaccatgcatcgagtatat |
34776390 |
T |
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| Q |
119 |
tttagataatattgatattctacaattttattattctacttttgagaaatagtagttttgaagcattgtttatttttcatatgacataatttggggttcg |
218 |
Q |
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| T |
34776389 |
tttagataatattgatattctacaattttattattctacttttgagaaatagtagttttgaagcattgtttatttttcatatgacataatttggggttcg |
34776290 |
T |
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| Q |
219 |
aactcccgctcttgtataccgcaatgtctatgctagttgagttatgtgacaagttcatttacatatgttttggaatgagtttt |
301 |
Q |
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| T |
34776289 |
aattcccgctcttgtataccgcaatgtctatgcttgttgagttatgtgacaagttcatttacatatgttttggaatgagtttt |
34776207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 346 - 551
Target Start/End: Complemental strand, 34776165 - 34775964
Alignment:
| Q |
346 |
gcatgtccaatattttactgtctgcacaccctttttcctttgcttacatatctctgcttctctattgggctacagtaagtaagggttgctgcttgcatta |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
34776165 |
gcatgtccaatattttactgtctgcacaccctttttcctttgcttacatatctccgtttctctattgggccacagtaag----ggttgctgcttgcatta |
34776070 |
T |
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| Q |
446 |
catgtccctaagattactatcgtgcacccctatctagcatgaaacgtaatttcagtctcccttcatactagtgtcagttgcacattttcattccttttct |
545 |
Q |
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| T |
34776069 |
catgtccctaagattactatcgtgcacccctagctagcatgaaacgtaatttcagtctcccttcatactagtgtcagttgcacattttcattccttttct |
34775970 |
T |
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| Q |
546 |
tctctc |
551 |
Q |
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|||||| |
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| T |
34775969 |
tctctc |
34775964 |
T |
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