View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_26 (Length: 517)
Name: NF11278_high_26
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 54 - 506
Target Start/End: Original strand, 4490655 - 4491091
Alignment:
| Q |
54 |
gagaagtggaccccaaacttaaggacttttaggcttttacatgtgtccaaaaaatacaatcttcacaattaatgttggccaattccataaagccatctca |
153 |
Q |
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| T |
4490655 |
gagaagtggaccccaaacttaaggacttttaggcttttacatgtgtccacaaaatacaatattcacaattaatgttggccaattccataaagccatctca |
4490754 |
T |
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| Q |
154 |
ttcgtatttaagtttgtaagtaaataatacgttctatggatgcatactgaatttctgatctaaatattagccttatgtttagcatcttaaacttgtatca |
253 |
Q |
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| T |
4490755 |
ttcgtatataagtttgtaaatatataatacgttctatggatgcatactgaatttctgatctaaatattagccttatgtttagcatcttaaacttgtatca |
4490854 |
T |
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| Q |
254 |
agtgagacttttgctatccacagaccctgcatctgtataagggtcttagtagtaaaatgtgagacttccattagataaaaataaaaatgtaaacctcaaa |
353 |
Q |
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| T |
4490855 |
agtgagacttttgctatccacagaccctgcatctgtataagggtcttagtagtaaaatgtgagacttccattagataaaaataaaaatgtaaacctcaaa |
4490954 |
T |
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| Q |
354 |
atagattggatggctgataaagacaaattgagatagatattgtccaaggaaattgtt-gaaatgtcaatttaccatagtaatcactgaattttgcaagtg |
452 |
Q |
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| T |
4490955 |
atagattgg-----------------attgagatagatattgtccaaggaaattgttggaaatgtcaatttaccatagtaatcactaaattttgcaaggg |
4491037 |
T |
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| Q |
453 |
catcatttgcaacttaagctgctgttataagaaccttttttatcttctcttcat |
506 |
Q |
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| T |
4491038 |
catcatttgcaacttaagctgctgttataagaaccttttttatcttctcttcat |
4491091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 469
Target Start/End: Original strand, 4496498 - 4496667
Alignment:
| Q |
312 |
gtgagacttccattagataaaaataaaaatgtaaacctcaaaatagattggatggctgataa---agacaaattgagatagatat---------tgtcca |
399 |
Q |
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| T |
4496498 |
gtgaaacttccattagataaaaataaaaaagtaaatctcaaattagattatatggctaagaaggaagaaaaattaagacagatatctaatcccttgtcca |
4496597 |
T |
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| Q |
400 |
aggaaattgttgaaatgtcaatttaccatagtaatcactgaattttgcaagtgcatcatttgcaacttaa |
469 |
Q |
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| T |
4496598 |
agaatgttgttgaaatgtcaatttaccatagtaatggttgaattttgcaagtgcatcctttgcaacttaa |
4496667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 4496341 - 4496425
Alignment:
| Q |
123 |
taatgttggccaattccataaagccatctcattcgtatttaagtttgtaagtaaataatacgttctatggatgcatactgaattt |
207 |
Q |
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| T |
4496341 |
taatgttggccaattccttaaagccatctcattcatatataagtttgtaagtatacagtacattccagggatgcattctgaattt |
4496425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 4496457 - 4496506
Alignment:
| Q |
214 |
taaatattagccttatgtttagcatcttaaacttgtatcaagtgagactt |
263 |
Q |
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| T |
4496457 |
taaatattagccttatgtttagcatcttttacttgtattaagtgaaactt |
4496506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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