View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_27 (Length: 512)
Name: NF11278_high_27
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Original strand, 55144170 - 55144652
Alignment:
| Q |
20 |
ccgtaagatagttcacaattttgttttcttcaatgcggttcattttgatttaatggttccatttagtttatggtttcttgatttgataagtgagaaagaa |
119 |
Q |
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| T |
55144170 |
ccgtaagatagttcacaattttgttttcttcaatgcggttcattttgatttaatggttccatttagtttatggtttcttgatttgataagtgagaaagaa |
55144269 |
T |
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| Q |
120 |
aacatgatgaaaagtgagtccattatgagtttttatttgaaatagacattggtgtaaaatatggttaatgtatgtttttaattgttacttacatggattg |
219 |
Q |
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| T |
55144270 |
aacatgatgaaaagtgagtccattatgagtttttatttgaaatagacattggtgtaaaatatggttaatgtatgtttttaattgttacttacatggattg |
55144369 |
T |
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| Q |
220 |
aattagtctacttaaattgtatataagatcccaagaaatatttaagaaccaaaagtcagttttgtattaataggtatattcttacannnnnnnatcaaaa |
319 |
Q |
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| T |
55144370 |
aattagtctacttaaattgtatataagatcccaagaaatatttaagaaccaaaagtcagttttgtattaataggtatattcttacatttttttatcaaaa |
55144469 |
T |
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| Q |
320 |
aagaagttcaatagttggagatgctataaataactttactactggaaaagaaannnnnnnatagttgttgtgtatcatgagaatgagatagactgatact |
419 |
Q |
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| T |
55144470 |
aagaagttcaatagttggagatgctataaataactttactactggaaaagaaaaaaatttatagttgttgtgtatcatgagaatgagatagactgatact |
55144569 |
T |
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| Q |
420 |
ttttcacatgctcacatgttgtgacttgtaaggtaaaagtgcaagattttccccctctactgttttagttagggtggcctttg |
502 |
Q |
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| T |
55144570 |
ttttcacatgctcgcatgttgtgacttgtaaggtaaaagtgcaagattttccccctctactgttttagttagggtggcctttg |
55144652 |
T |
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