View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_28 (Length: 510)
Name: NF11278_high_28
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 42835171 - 42834694
Alignment:
| Q |
18 |
attaccatgtccaattccctgttcgcatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgag |
117 |
Q |
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| T |
42835171 |
attaccatgtccaattccctgttcgtatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgag |
42835072 |
T |
|
| Q |
118 |
tagcatgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835071 |
tagcatgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaa |
42834972 |
T |
|
| Q |
218 |
ttgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42834971 |
ttgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttccgagttcaatttt |
42834872 |
T |
|
| Q |
318 |
tgcacatcttgcttatggttagtttcattatcctcatacactgtaaccaaatctcctagcatttgattcttctttctctctgaaaccagctccaattctg |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42834871 |
tgcacatcttgcttatgtttagtttcattatcctcatacactgtaaccaaatctcctagcatttgactcttctttctctctgaaaccagctccaattctg |
42834772 |
T |
|
| Q |
418 |
atttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
495 |
Q |
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| T |
42834771 |
atttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
42834694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 74 - 334
Target Start/End: Complemental strand, 42843969 - 42843706
Alignment:
| Q |
74 |
ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgca--tct-cttgtttcaagttttcagcttcatatttacgtaatttgttt |
170 |
Q |
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||||||||||||| | | ||||||||||| | |||||| ||||||||||||| ||| |||||||||| |||||||||||||| | | |||||||||| |
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| T |
42843969 |
ttccctcaaagaattaacttcatcttgcaaagtcatttgctgagtagcatgcaattcttcttgtttcaatttttcagcttcatactgtcttaatttgttt |
42843870 |
T |
|
| Q |
171 |
tctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttct |
270 |
Q |
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|| |||||||||||| |||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||| ||||| | ||||||| | | |||||| |
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| T |
42843869 |
tccaattccttgtttctagactcacaatcctccaatttagaggtcaattgtattttcatgtttgacaaacttgtaatattagaattcagcttacctttct |
42843770 |
T |
|
| Q |
271 |
ccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgcacatcttgcttatg |
334 |
Q |
| |
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| |||||||||||| ||| ||| | |||||| ||| ||||||||||||| |||| |||||| |
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| T |
42843769 |
cagaagagaacttagtctgccaattatgcattttagacatcaatttttgcacctctttcttatg |
42843706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 486
Target Start/End: Complemental strand, 42819650 - 42819561
Alignment:
| Q |
397 |
ctgaaaccagctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactcc |
486 |
Q |
| |
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||||||| | |||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||||||||| |
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| T |
42819650 |
ctgaaactaactccaattttgatatagccatattttcctgtgccactttaagctgaccttccaattgataagtctcagatgacttactcc |
42819561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 42819734 - 42819689
Alignment:
| Q |
301 |
tttcagagttcaatttttgcacatcttgcttatggttagtttcatt |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42819734 |
tttccgagttcaatttttgcacatcttggttatggttagtttcatt |
42819689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 42843654 - 42843576
Alignment:
| Q |
407 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactc |
485 |
Q |
| |
|
|||||||||| ||||||| ||||| | |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
42843654 |
ctccaattctaatttagcaatattgttttgtgctgcttcaagctgactttgcaattgacgagtatcatgtgacttactc |
42843576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 7363574 - 7363898
Alignment:
| Q |
19 |
ttaccatgtccaattccctgttcgcatcttctatatc--atgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgt |
113 |
Q |
| |
|
|||||||| |||||| ||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||| | | |||||||||| || ||||||| |
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| T |
7363574 |
ttaccatgcccaatttcctattcacatcttctatatagtatgcattctttgaccaagttcttccctcaaagaattaacctcatcttgcaaaatcatttgt |
7363673 |
T |
|
| Q |
114 |
tgagtagcatgca--tct-cttg-tttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagttta |
209 |
Q |
| |
|
||||||||||||| ||| |||| |||||| |||||||||||||||| | |||||||||||| |||||||||||| |||||||||||| ||| | |||| |
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| T |
7363674 |
tgagtagcatgcaattcttcttgatttcaatttttcagcttcatattgtcctaatttgttttccaattccttgtttctagactcacaatcctccaattta |
7363773 |
T |
|
| Q |
210 |
gaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagt |
309 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| |||||||| || ||||||| |||||||||||| ||| ||| | |||||||||| |
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| T |
7363774 |
gaggtcaattgtattttcatgtttgacaaacatgcaatattaaaattcaactcccctttctcagaagagaacttagtctgccaattatgcatttcagaca |
7363873 |
T |
|
| Q |
310 |
tcaatttttgcacatcttgcttatg |
334 |
Q |
| |
|
||||||||||||| |||| |||||| |
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|
| T |
7363874 |
tcaatttttgcacctctttcttatg |
7363898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 475
Target Start/End: Original strand, 7363950 - 7364018
Alignment:
| Q |
407 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatg |
475 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |||||||||||| ||||||| ||||||| ||||| |
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|
| T |
7363950 |
ctccaattctaatttagcaatattttttagtgccgctttaagctgactttgcaatagatgagtatcatg |
7364018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 12628516 - 12628325
Alignment:
| Q |
46 |
cttctatatcatgtattctttgaccaag---ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctctt---gtttcaa |
139 |
Q |
| |
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|||||| ||||||| |||| |||||||| ||||||||| ||||||||||||| |||| || ||||||||||||||||| || ||||| |||||| |
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| T |
12628516 |
cttctacatcatgttttctctgaccaaggtcttccctcaatgaactgatttcattgtgcaaaatcatttgttgagtagcattcaactcttcttgtttcat |
12628417 |
T |
|
| Q |
140 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcattt |
231 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||| ||| || | ||||||| |||||||||||||||||| |
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|
| T |
12628416 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcataatcatccaatttagagatcaattgtattttcattt |
12628325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 321
Target Start/End: Complemental strand, 12622590 - 12622306
Alignment:
| Q |
46 |
cttctatatcatgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttg---tttcaa |
139 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| ||||||| ||| |||| ||||| || | |||||||||||||||||| || ||||| ||||| |
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|
| T |
12622590 |
cttctatctcatgctttctctgaccaagttcttccctcaaataacagattgtatcttccaaagccatttgttgagtagcattcaactcttcatttttcat |
12622491 |
T |
|
| Q |
140 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaa |
239 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||| ||||||||| ||| | |
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|
| T |
12622490 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcacagtcctccagtttagaggtcaattgttttttcatttcagac-at |
12622392 |
T |
|
| Q |
240 |
cttgcaatatca----aaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgca |
321 |
Q |
| |
|
||||||| || || || |||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||||| |
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|
| T |
12622391 |
cttgcaagtccatttgttctttagctcatctttctccaaagagaacttagcctccaaatcaaacatgtgagagttcaatttttgca |
12622306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 322
Target Start/End: Original strand, 30924113 - 30924357
Alignment:
| Q |
81 |
aaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttgtttc---aagttttcagcttcatatttacgtaatttgttttctaatt |
177 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||| ||||||| || ||||| |||| || |||||||||||| || | ||| |||||| ||||| |
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|
| T |
30924113 |
aaagaactaatttcgccttgcataaccattttttgtgtagcatacaactcttctttctccaaattttcagcttcacatcgccttaacttgtttgctaatg |
30924212 |
T |
|
| Q |
178 |
ccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaaga |
277 |
Q |
| |
|
| | || ||||||| || | ||| ||| | |||||||| ||| |||| |||| |||||| |||||||||||| ||| || || ||||||||| ||||| |
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|
| T |
30924213 |
aatggcttctagactcccattcctccagtgttgaggtcaactgtgtttttatttctgacaagcttgcaatatcagaatgcaattgatctttctcaaaaga |
30924312 |
T |
|
| Q |
278 |
gaacttagcttgcaaatcaagcatttcagagttcaatttttgcac |
322 |
Q |
| |
|
|||| || |||| |||| |||||||| |||| ||||||||| |
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|
| T |
30924313 |
aaactgtgcctgcacatcatgcatttcatccttcagtttttgcac |
30924357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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