View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_32 (Length: 497)
Name: NF11278_high_32
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 41758535 - 41758804
Alignment:
| Q |
17 |
aatcattgccagaattgacgacaagagcaacagaggattggaggtcttgtttggtatagacattttgtttgattagcttctcaagtgagtcaatttgaac |
116 |
Q |
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| T |
41758535 |
aatcattgccagaattgacgacaagagcaacagaggattggaggtcttgtttggtatagacattttgtttgattagcttctcaagtgagtcaatttgaac |
41758634 |
T |
|
| Q |
117 |
agtcatgtttggtccattggtcaatgtttggaaaacacctgttcctccataagcaaagttgattccattttgtagagttgaggaatttctcaatgcatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41758635 |
agtcatgtttggtccattggtcaatgtttggaaaacacctgttcctccataagcaaagttgattccattttgtagagttgaggaatttctcaatgcatat |
41758734 |
T |
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| Q |
217 |
ggtgtaggggttttaattttcagaaaggaagctgcatgtaataacacatacatacgtacatatatgagta |
286 |
Q |
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| T |
41758735 |
ggtgtaggggttttaattttcagaaaggaagctgcatttaataacacatacatacgtacatatatgagta |
41758804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 41754324 - 41754562
Alignment:
| Q |
37 |
acaagagcaacagaggattggaggtcttgtttggtatagacattttgtttgattagcttctcaagtgagtcaatttgaacagtcatgtttggtccattgg |
136 |
Q |
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| T |
41754324 |
acaagggcaacagaggattgaaggtcttgtttggtatagacatttttttgaattaacttctcaagtgagtcaatttggacagtcatatttggtccatcct |
41754423 |
T |
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| Q |
137 |
tca------atgtttggaaaacacctgttcctccataagcaaagttgattccattttgtagagttgaggaatttctcaatgcatatggtgtaggggtttt |
230 |
Q |
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| T |
41754424 |
tcaccttcaatgtttggaaaacacctgttcctccaaaagcaaagttgattccattttgtagagttgaggaatttctcaatgcatatggtgcaggggtttc |
41754523 |
T |
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| Q |
231 |
aattttcagaaaggaagctgcatgtaataacacatacat |
269 |
Q |
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| T |
41754524 |
aattttcaaaaaggaagctgcatgtaataacacatacat |
41754562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 381 - 486
Target Start/End: Original strand, 41759287 - 41759392
Alignment:
| Q |
381 |
ccagacactgagacacattttcaatcaaaagcgtaggtacaacaatggatataactaaccatcttaagtttaagtggatatatcccctttcaatcatgtt |
480 |
Q |
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| T |
41759287 |
ccagacactgagacacattttcaatcaaaagcgtaggtacaacaatggatataactaaccatcttaagtttaagtggatatatcccctttcaatcatgtt |
41759386 |
T |
|
| Q |
481 |
tttctt |
486 |
Q |
| |
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|||||| |
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| T |
41759387 |
tttctt |
41759392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 41747936 - 41748143
Alignment:
| Q |
49 |
gaggattggaggtcttgtttggtatagacattttgtttgattagcttctcaagtgagtcaatttgaacagtcatgtttggtccattggtcaatgtttgga |
148 |
Q |
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|||||||| ||||| |||||||||| |||||||||| ||||| |||||||| || ||| ||||| ||||||||||||||||||| |||| || |||| |
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| T |
41747936 |
gaggattgaaggtcgggtttggtatacacattttgttggattaacttctcaaatgtgtcgatttggacagtcatgtttggtccatcaatcaaagtatgga |
41748035 |
T |
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| Q |
149 |
aaacacctgttcctccataagcaaagttgattccattttgtagagttgaggaatttctcaatgcatatggtgtaggggttttaattttcagaaaggaagc |
248 |
Q |
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| T |
41748036 |
aaacaccagtccctccataggcaaagttcatgccatattgtagttctgaggatttcttcaatgaatatggtctaggggattttatattcagaaaggaagc |
41748135 |
T |
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| Q |
249 |
tgcatgta |
256 |
Q |
| |
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|||||||| |
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| T |
41748136 |
tgcatgta |
41748143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 41759012 - 41759085
Alignment:
| Q |
310 |
tgaatcaaatcaaaccaagaggaaaaaacagtaatacgaactaataagcctattatgccctgttttgaagtcca |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
41759012 |
tgaatcaaatcaaaccaagaggaaaaaacagtaatacgaactagtaagcctattatgccctattttgaagtcca |
41759085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 49 - 253
Target Start/End: Original strand, 41734267 - 41734471
Alignment:
| Q |
49 |
gaggattggaggtcttgtttggtatagacattttgtttgattagcttctcaagtgagtcaatttgaacagtcatgtttggtccattggtcaatgtttgga |
148 |
Q |
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||||||| ||||| |||||||||||||||||||||| |||| |||||||| |||||| ||||| ||| ||||||||||||||| ||| || | || |
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| T |
41734267 |
gaggattcaaggtcatgtttggtatagacattttgttgtattaacttctcaaatgagtctatttgtacactcatgtttggtccatcaaccaaagtattga |
41734366 |
T |
|
| Q |
149 |
aaacacctgttcctccataagcaaagttgattccattttgtagagttgaggaatttctcaatgcatatggtgtaggggttttaattttcagaaaggaagc |
248 |
Q |
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||| ||| || ||||||| |||||||| | |||| ||||| || |||||||||||||||||| ||||| |||| ||| ||||||| ||||||||| |
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| T |
41734367 |
aaataccagtccctccatgtgcaaagttcagaccatattgtacttctgtggaatttctcaatgcatacggtgtgggggattttattttcaaaaaggaagc |
41734466 |
T |
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| Q |
249 |
tgcat |
253 |
Q |
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||||| |
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| T |
41734467 |
tgcat |
41734471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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