View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_high_34 (Length: 477)
Name: NF11278_high_34
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 461
Target Start/End: Complemental strand, 56281946 - 56281495
Alignment:
| Q |
9 |
acgtaggttgtagcagttgcttcactgccaaaggaaatagctgctgggttacatccgaagcaaaataattcaatcagaggactattgttacaatcaggat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56281946 |
acgtaggttgtagcagttgcttcactgccaaaggaaatagctgctgggttacatccgaagcaaaataattcaatcagaggactattgttacaatcaggat |
56281847 |
T |
|
| Q |
109 |
gggtagttgagaagctggaagataattcatgtgctgttacttatgttgttcaggtaattaaagttaatatccatactatttaatttctgcaacaataaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
56281846 |
gggtagttgagaagctggaagataattcatgtgctgttacttatgttgttcaggtaattgaagttaatatccatactattt-----ctgcaacaataaaa |
56281752 |
T |
|
| Q |
209 |
tcttgactaat----aagttttcctcatcgctttgttttattcagttagatcctgcagggtggttgcccaagtgctttgtcaatcgatttaacacaaaac |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56281751 |
tcttgactaattaataagttttcctcatcgctttgttttattcagttagatcctgcagggtggttgcccaagtgctttgtcaatcgatttaacacaaaac |
56281652 |
T |
|
| Q |
305 |
tggttatgatcattgaaaaccttagaaaattagcccaagcatgtccaaatgaagctgaaaattgaccactttgtaaagttgcaggagtcagaaaggatca |
404 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
56281651 |
tcgttatgatcattgaaaaccttagaaaattagcccaagcatgtccaaatgaagctgaaaatttaccactttgtaaagttgcaggagtcagaaaggatca |
56281552 |
T |
|
| Q |
405 |
gtgtaaccaagcactctcaaattaatgtgatatattatttgcttactatcatagatt |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56281551 |
gtgtaaccaagcactctcaaattaatgtgatatattatttgcttactatcatagatt |
56281495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University