View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_36 (Length: 468)
Name: NF11278_high_36
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 170 - 451
Target Start/End: Complemental strand, 12910110 - 12909830
Alignment:
| Q |
170 |
aaatggctcataaaaattcatactttgttatgcttttgatttcggaagttcttagtgctgtctcccttacttctccctccatgctccctgatttcgcttc |
269 |
Q |
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| T |
12910110 |
aaatggctcataaaa-ttcatactttgttatgcttttgatttcggaagttcttagtgctgtctctcttacttctccctccatgctccctgatttcgcttc |
12910012 |
T |
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| Q |
270 |
aggttgcttcatgtgtttaacagtgtaatatttatagcatctttgattttattgaatttatgttgaccaagtcattttcgttgcactgtttgttctcaca |
369 |
Q |
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| T |
12910011 |
aggttgcttcatgtgtttaacagtgtaatatttatagcatctttgattttattgaatttatgttgaccaagtcattttcgttgcactgtttgttctcaca |
12909912 |
T |
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| Q |
370 |
tccatcagacatgcaagctgtttttccctttccatttagaactcaaaacatttattttaaaaagtcatgcttgctgattcat |
451 |
Q |
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| T |
12909911 |
tccatcagacatgcaagctgtttttccatttccatttaggactcaaaacgtttattttaaaaagtcatgcttgctgattcat |
12909830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 12910279 - 12910156
Alignment:
| Q |
1 |
caacttgtactttgtgtgtttcatatctttaggtcactccaagtaggataagactctttatttggattttagcaaatcgaatttttagaccaatcattaa |
100 |
Q |
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| T |
12910279 |
caacttgtactttgtgtgtttcatatctttaggtcactccaagtaggataagactctttatttggattttagcaaatcgaatttttagaccaatcattaa |
12910180 |
T |
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| Q |
101 |
tgggaagaatcctattgcacatcc |
124 |
Q |
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| T |
12910179 |
tgggaagaatcctattgcacatcc |
12910156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 170 - 451
Target Start/End: Original strand, 13308497 - 13308762
Alignment:
| Q |
170 |
aaatggctcataaaaattcatactttgttatgcttttgatttcggaagttcttagtgctgtctcccttacttctccctccatgctccctgatttcgcttc |
269 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |
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| T |
13308497 |
aaatggttaataaaaattcatactttgttatgcttttgataacggcagttcttagtgctgtctcccttactgctccctctatgctccctggttttgcttt |
13308596 |
T |
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| Q |
270 |
aggttgcttcatgtgtttaacagtgtaatat---ttatagcatctttgattttattgaatttatgttgaccaagtcattttcgttgcactgtttgttctc |
366 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || ||||||| | |||||| |||||||||||||| | |
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| T |
13308597 |
aggttgcttcatgtgtttaacagtgtaatatttattatagcatcatttattttat-------------------taattttcattgcactgtttgtttta |
13308677 |
T |
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| Q |
367 |
acatccatcagacatgcaagctgtttttccctttccatttagaactcaaaacatttattttaaaaagtcatgcttgctgattcat |
451 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
13308678 |
acatccattgaacatgcaagctgtttttccatttccatttagaactcaaaacatttattttaaaaagtcatgtttgctggttcat |
13308762 |
T |
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