View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_38 (Length: 466)
Name: NF11278_high_38
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 41296740 - 41296543
Alignment:
| Q |
15 |
agaaataccaagaacagcaacagccaaacgaagtgtctctgacatgttaaatatgttgtttggtctctacttagaagaagagatgtaatgtaatattttt |
114 |
Q |
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| T |
41296740 |
agaaataccaagaacagcaacagccaaacgaagtgtctctgacatgttaaatttgttgtttagtctctacttagaagaagagatgtaatgtaatattttt |
41296641 |
T |
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| Q |
115 |
gttttgagagaagagcattaaggacatgctctatttatagttgttacttaggacgcgtatgtaacatggtagtgtccagcttgaaacaaaaccgtacg |
212 |
Q |
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| T |
41296640 |
gttttgagagaagagcattaaggacatgctctatttatagttgttacttaggacgcgtatgtaacatggtagtgtccagcttgaaacaaaaccgtacg |
41296543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 281 - 452
Target Start/End: Complemental strand, 41296476 - 41296305
Alignment:
| Q |
281 |
tggtttgtacataagtaataatcacgtggacgcaatatttggttcaacttgagaagctttccatcaacttgagaattccagccnnnnnnnctccctagtt |
380 |
Q |
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| T |
41296476 |
tggtttgtacataagtaataatcacgtggacgcaatatttggttcaacttgagaagctttccatcaacttgagaattccagcctttttttctccctagtt |
41296377 |
T |
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| Q |
381 |
tttagaggcttattgttattatttcccatcaattttgctagctattattcacaaatttcttgcgtgtcactt |
452 |
Q |
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| T |
41296376 |
tttagaggcttattgttattatttcccataaattttgctagctattattcacaaatttcttgcgtgtcactt |
41296305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 41306498 - 41306308
Alignment:
| Q |
18 |
aataccaagaacagcaacagccaaacgaagtgtctctgacatgttaaatatgttgtttggtctctacttagaagaagagatgtaatgtaatatttttgtt |
117 |
Q |
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| T |
41306498 |
aataccaagaacagcaacagccagacgaagtgtatttgacatctttaatttgttttttactctctacttagaagaagaaatg----ataata-ttttgta |
41306404 |
T |
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| Q |
118 |
ttg------agagaagagcattaaggacatgctctatttatagttgttacttaggacgcgtat----gtaacatggtagtgtccagcttgaaacaa |
203 |
Q |
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| T |
41306403 |
ttgtaccacgaagaagaacattgaggacatgctctatttatagtcgttatgtaggacgcgtatttaattaacatagtagtgtccagcttgaaacaa |
41306308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 41306232 - 41306193
Alignment:
| Q |
296 |
taataatcacgtggacgcaatatttggttcaacttgagaag |
336 |
Q |
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| T |
41306232 |
taataatcacgtggacacaa-atttggttcaacttgagaag |
41306193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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