View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_39 (Length: 464)

Name: NF11278_high_39
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_39
NF11278_high_39
[»] chr1 (3 HSPs)
chr1 (75-316)||(45878398-45878640)
chr1 (316-453)||(45878685-45878822)
chr1 (28-75)||(6579846-6579893)
[»] chr8 (3 HSPs)
chr8 (19-85)||(9452567-9452633)
chr8 (19-82)||(30087509-30087572)
chr8 (19-75)||(24970854-24970910)
[»] chr3 (3 HSPs)
chr3 (19-75)||(25163895-25163951)
chr3 (19-75)||(46104957-46105014)
chr3 (19-75)||(25704749-25704805)
[»] chr4 (3 HSPs)
chr4 (19-75)||(41396563-41396619)
chr4 (19-75)||(23201735-23201791)
chr4 (23-75)||(31430598-31430650)
[»] chr6 (1 HSPs)
chr6 (19-80)||(1222558-1222619)
[»] chr7 (5 HSPs)
chr7 (19-75)||(12487919-12487975)
chr7 (19-74)||(38795315-38795370)
chr7 (19-75)||(27619247-27619303)
chr7 (20-78)||(28106869-28106927)
chr7 (45-75)||(39512267-39512297)
[»] chr5 (4 HSPs)
chr5 (19-74)||(31956431-31956486)
chr5 (22-75)||(29963886-29963939)
chr5 (22-75)||(30010859-30010912)
chr5 (45-80)||(3068647-3068682)
[»] chr2 (1 HSPs)
chr2 (19-75)||(10256882-10256938)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 316
Target Start/End: Original strand, 45878398 - 45878640
Alignment:
Q  75 caaagtatatgtccatgcaagagatgcatttgtgccttgatcatatttttgtggtaggggagtatcgcggcgagaccaaactgtcttggaggcacatccc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45878398 caaagtatatgtccatgcaagagatgcatttgtgccttgatcatatttttgtggtaggggagtatcgcggcgagaccaaactatcttggaggcacatccc 45878497  T
Q  175 taacaatttaattcttgaaatattgatgtatccatgttgcacttcagctagctttctgttggtcatttccacattgcaccatttaagaaaattgatactt 274  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45878498 tgacaatttaattcttgaaattttgatgtatccatgttgcacttcagctagctttctgttggtcatttccacattgcaccatttaagaaaattgatactt 45878597  T
Q  275 t-gacggtcatttttggacaacttgatagataattctttatgc 316  Q
    | || ||||||||||||||||||||||||||||||||||||||    
T  45878598 tagatggtcatttttggacaacttgatagataattctttatgc 45878640  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 316 - 453
Target Start/End: Original strand, 45878685 - 45878822
Alignment:
Q  316 ccaaccttattttgtatatttgcttgtcccgtaagttgtaaaaagttaggtctaaataacatacctctttaaagaattttcatgtcataataatttgagc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45878685 ccaaccttattttgtatatttgcttgtcccgtaagttgtaaaaagttaggtctaaataacatacctctttaaagaattttcatgtcataataatttgagc 45878784  T
Q  416 cgcttgctgatttttcaccccctcccatactcattcat 453  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45878785 cgcttgctgatttttcaccccctcccatactcattcat 45878822  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 6579846 - 6579893
Alignment:
Q  28 ccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    ||||||||||| || |||||| ||||||||| ||||||||||||||||    
T  6579846 ccttagaagtagaagataagtggaaaataagcagggccaaacatgctc 6579893  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 9452633 - 9452567
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctcaaagtatatg 85  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9452633 cctacttctccttagaagtaaaaaataagtggaaaataaggagggccaaacatgctctaagtatatg 9452567  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 30087509 - 30087572
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctcaaagtat 82  Q
    |||||||||||||| || |  || ||||||||||||| ||||||||||||||||||| ||||||    
T  30087509 cctacttctccttaaaattggaatataagtagaaaatcaggagggccaaacatgctctaagtat 30087572  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 24970910 - 24970854
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||| ||||||||| || | ||||  |||||||||||||||||||||||||    
T  24970910 cctacttctctttagaagtagaagagaagtgaaaaataaggagggccaaacatgctc 24970854  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 25163951 - 25163895
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25163951 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 25163895  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 46105014 - 46104957
Alignment:
Q  19 cctacttctccttagaagtaaaaaa-taagtagaaaataaggagggccaaacatgctc 75  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||    
T  46105014 cctacttctccttagaagtaaaaaaataagtagaaaataagaaggatcaaacatgctc 46104957  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 25704805 - 25704749
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||| ||||| || | ||||  ||||||||||||| |||||||||||    
T  25704805 cctacttctccttaaaagtagaagagaagtgaaaaataaggagggtcaaacatgctc 25704749  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 41396619 - 41396563
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  41396619 cctacttctccttaaaaataaaaaataagtagaaaataaggagggccaaacatgctc 41396563  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23201735 - 23201791
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||||||| || | |||| ||||||||||||||||||||||||||    
T  23201735 cctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 23201791  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 31430598 - 31430650
Alignment:
Q  23 cttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||| || | |||| ||||||||||||||||||||||||||    
T  31430598 cttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 31430650  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1222619 - 1222558
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctcaaagt 80  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  1222619 cctacttctctttataagtaaaaaataagtagaaaataagaagggacaaacatgctcaaagt 1222558  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12487975 - 12487919
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  12487975 cctacttcttcttagaagtgaaagataagtagaaaataaggagggccaaacatgctc 12487919  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38795370 - 38795315
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgct 74  Q
    |||||||||||||||||||| || | |||| |||||||||||||||||||||||||    
T  38795370 cctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgct 38795315  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 27619303 - 27619247
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||||||| || | || | ||||||||| ||||||||||||||||    
T  27619303 cctacttctccttagaagtagaagagaaatggaaaataagaagggccaaacatgctc 27619247  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28106927 - 28106869
Alignment:
Q  20 ctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctcaaa 78  Q
    |||||||| |||||||||| || | |||| ||||||||||||| ||||||| |||||||    
T  28106927 ctacttcttcttagaagtagaagagaagtggaaaataaggaggaccaaacacgctcaaa 28106869  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 39512267 - 39512297
Alignment:
Q  45 aagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||||||||||||||||||    
T  39512267 aagtagaaaataaggagggccaaacatgctc 39512297  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 31956431 - 31956486
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgct 74  Q
    |||||||||||||||||||| || | |||  |||||||||||||||||||||||||    
T  31956431 cctacttctccttagaagtagaagagaagcggaaaataaggagggccaaacatgct 31956486  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 29963939 - 29963886
Alignment:
Q  22 acttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    ||||||| |||||||||||| |||||| | ||||||| ||||||||||||||||    
T  29963939 acttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 29963886  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 30010859 - 30010912
Alignment:
Q  22 acttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    ||||||| |||||||||||| |||||| | ||||||| ||||||||||||||||    
T  30010859 acttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 30010912  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 3068647 - 3068682
Alignment:
Q  45 aagtagaaaataaggagggccaaacatgctcaaagt 80  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3068647 aagtagaaaataaggagggccaaacatgctctaagt 3068682  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 10256938 - 10256882
Alignment:
Q  19 cctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 75  Q
    |||||||||||||||||||| || | ||   ||||||||||||||||||||||||||    
T  10256938 cctacttctccttagaagtagaagagaacgggaaaataaggagggccaaacatgctc 10256882  T

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