View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_4 (Length: 746)

Name: NF11278_high_4
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_4
NF11278_high_4
[»] chr8 (3 HSPs)
chr8 (427-730)||(10669858-10670170)
chr8 (20-159)||(10669712-10669851)
chr8 (433-503)||(36574922-36574992)
[»] chr6 (2 HSPs)
chr6 (344-510)||(22540098-22540263)
chr6 (320-487)||(22540592-22540759)
[»] chr3 (4 HSPs)
chr3 (401-503)||(7481942-7482044)
chr3 (401-503)||(7463844-7463946)
chr3 (529-603)||(20974930-20975003)
chr3 (551-603)||(20961014-20961066)
[»] chr4 (3 HSPs)
chr4 (529-599)||(10128706-10128775)
chr4 (369-509)||(13231338-13231478)
chr4 (552-597)||(3232568-3232613)
[»] chr2 (4 HSPs)
chr2 (369-499)||(14243853-14243983)
chr2 (326-477)||(34404805-34404956)
chr2 (417-503)||(43236609-43236695)
chr2 (369-503)||(7982153-7982287)
[»] chr7 (1 HSPs)
chr7 (194-264)||(7214333-7214404)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 427 - 730
Target Start/End: Original strand, 10669858 - 10670170
Alignment:
Q  427 ccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaaaa-----tgattaca- 520  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     | ||||||     
T  10669858 ccagacagattctgccatgtcataaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaataattagtaattacag 10669957  T
Q  521 -----aatttggaaggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagccataatagtataacatt 615  Q
         | ||| ||||||||| ||| ||||||||||||||||||||||||  |||||||| ||| |||||| |||||||||||||||||||||||||| ||    
T  10669958 gacaaagtttagaaggattaataa-ctacatggaggaaaattcaactgagtcctatttgcagg-actatagacatatttaagccataatagtataacctt 10670055  T
Q  616 catcaacaactttgtgaacctaacatcaaagtaactcatctgtaataaaaggtgaatatgtaatgttaacttgaaagtttagttgagatgtacaatagat 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10670056 catcaacaactttgtgaacctaacatcaaagtaactcatctgtaataaaaggtgaatatgtaatgttaacttgaaagtttagttgagatgtacaatagat 10670155  T
Q  716 ttggcacgggactgt 730  Q
    |||||||||||||||    
T  10670156 ttggcacgggactgt 10670170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 10669712 - 10669851
Alignment:
Q  20 tgactagacaggggacatttcagatagaaaatcaacctcagactactttatgtttgtaggaggtaatttagttacatggagaagtagcaaaaagtggttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10669712 tgactagacaggggacatttcagatagaaaatcaacctcaggctactttacgtttgtaggaggtaatttagttacatggagaagtagaaaaaagtggttg 10669811  T
Q  120 cattatccattgttgaggctgaattccactagatggcgaa 159  Q
    ||||||||||||||||||||||||||| |  |||||||||    
T  10669812 cattatccattgttgaggctgaattccgcaggatggcgaa 10669851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 36574992 - 36574922
Alignment:
Q  433 agattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaa 503  Q
    ||||||||||| ||||||||||  |||||||||||||||||| |  ||||| |||||   |||||||||||    
T  36574992 agattctgccacgtcatcaccacctcactaatcatgtgccacgtcggtaattaaatgtgtttaggaccaaa 36574922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 344 - 510
Target Start/End: Complemental strand, 22540263 - 22540098
Alignment:
Q  344 atggtcaattcacacttgtctattatcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgcca 443  Q
    ||||||| ||||||||| | || | ||||||| || ||||||||||||| | | |||||||||||||||||| |||||||||| |||  | ||||| |||    
T  22540263 atggtcatttcacacttatttaatgtcattaaaggcaaaatggtcatttcaaatgaaatttgttgagtcatccatgtcctttt-cagtcaaattcttcca 22540165  T
Q  444 tgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaa 510  Q
    | ||||| ||| |||||||||||  ||||||| | |||||||||||  ||||| |||||| ||||||    
T  22540164 tctcatcgccacgtcactaatcaattgccacaaaagtaatcaaatgagattagaaccaaaattcaaa 22540098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 320 - 487
Target Start/End: Original strand, 22540592 - 22540759
Alignment:
Q  320 gaagaagaagaaaacaggggtaggatggtcaattcacacttgtctattatcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatg 419  Q
    |||||||||||| | |||||||| ||||||| |||  ||||||||| | | |||||||| |||||||  |||||| | ||||||||  ||| |||| |||    
T  22540592 gaagaagaagaagaaaggggtagaatggtcatttcttacttgtctaatttgattaagggaaaaatggcaattttagatgaaatttgaagagacatccatg 22540691  T
Q  420 tccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaa 487  Q
    | |||| ||||  ||||| | ||||||||||||||  ||| |||||||||| |||||| |||||||||    
T  22540692 ttctttcccagtcagatttttccatgtcatcaccacatcaataatcatgtggcacataagtaatcaaa 22540759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 7482044 - 7481942
Alignment:
Q  401 atttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggacc 500  Q
    ||||||||| ||||||||| ||||| |||  |||||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||||||  |||| ||||    
T  7482044 atttgttgactcatcaatgccctttcccaattagattttgccacgtcatcaccatctcactaatcatgtgccatataagtaatcaaatgagattatgacc 7481945  T
Q  501 aaa 503  Q
    |||    
T  7481944 aaa 7481942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 7463946 - 7463844
Alignment:
Q  401 atttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggacc 500  Q
    ||||||||| ||||||||| ||||| |||  |||||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||  |||| ||||    
T  7463946 atttgttgactcatcaatgccctttcccaattagattctgccacgtcatcaccatctcattaatcatgtgtcatataagtaatcaaatgaaattatgacc 7463847  T
Q  501 aaa 503  Q
    |||    
T  7463846 aaa 7463844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 529 - 603
Target Start/End: Complemental strand, 20975003 - 20974930
Alignment:
Q  529 aggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagccataa 603  Q
    |||||||||||  |||||||| |||||||||||||| ||||||||| |||||||||| |||||||||| ||||||    
T  20975003 aggattagtaag-tacatggacgaaaattcaactgagccctatttgcagggactatagacatatttaaaccataa 20974930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 20961066 - 20961014
Alignment:
Q  551 gaaaattcaactgaaccctatttgaagggactataaacatatttaagccataa 603  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||  |||||||    
T  20961066 gaaaattcaactgagccctatttgcagggactatagacatatttcggccataa 20961014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 529 - 599
Target Start/End: Complemental strand, 10128775 - 10128706
Alignment:
Q  529 aggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagcc 599  Q
    |||||||||||  ||||||||| |||||||||  |||||||||||| ||||||||||||||||||||||||    
T  10128775 aggattagtaag-tacatggagtaaaattcaaacgaaccctatttgcagggactataaacatatttaagcc 10128706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 509
Target Start/End: Complemental strand, 13231478 - 13231338
Alignment:
Q  369 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 468  Q
    |||||||||||||| ||||||||| | | |  ||||| | ||||||| ||||||||| ||||  |||||  ||||  ||||| |||  |||||| |||||    
T  13231478 tcattaagggtaaagtggtcatttcagatgtcatttgcttagtcatccatgtcctttcccagtcagattaagccacatcatcgccacatcactagtcatg 13231379  T
Q  469 tgccacatatgtaatcaaatggtattaggaccaaagttcaa 509  Q
    ||||||||| |||||||||||  ||| |||||||| |||||    
T  13231378 tgccacataagtaatcaaatgtgatttggaccaaatttcaa 13231338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 597
Target Start/End: Original strand, 3232568 - 3232613
Alignment:
Q  552 aaaattcaactgaaccctatttgaagggactataaacatatttaag 597  Q
    |||||||||  || ||||||||| ||||||||||||||||||||||    
T  3232568 aaaattcaaacgagccctatttgcagggactataaacatatttaag 3232613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 499
Target Start/End: Original strand, 14243853 - 14243983
Alignment:
Q  369 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 468  Q
    ||||||| || ||||||||||||  ||| | |||||| |||||||||  |||||||| |||   | ||| |||||  ||||| | | |||||||||||||    
T  14243853 tcattaatggaaaaatggtcattccatatgtaatttgctgagtcatccttgtcctttcccaatcaaattatgccacatcatcgctacgtcactaatcatg 14243952  T
Q  469 tgccacatatgtaatcaaatggtattaggac 499  Q
    ||||||||| |||||||||||  ||||||||    
T  14243953 tgccacataagtaatcaaatgagattaggac 14243983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 477
Target Start/End: Original strand, 34404805 - 34404956
Alignment:
Q  326 gaagaaaacaggggtaggatggtcaattcacacttgtctattatcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttt 425  Q
    |||||| | |||||||| ||||||| ||  ||| |||||| | | |||||||| | ||||||||||||| | | ||||||||| |||| | |||||||||    
T  34404805 gaagaagaaaggggtagaatggtcattttgcacatgtctagtttaattaagggcagaatggtcattttagatggaatttgttgtgtcaaccatgtccttt 34404904  T
Q  426 tccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacata 477  Q
     ||||  ||||| ||||| |||||| |||  ||||| || ||||| ||||||    
T  34404905 cccagtcagattatgccacgtcatcgccacatcacttattatgtgtcacata 34404956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 43236695 - 43236609
Alignment:
Q  417 atgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaa 503  Q
    ||||||||| |||  |||||||||||| ||||||||||  |||||||||||||||||| |  ||||| |||||   |||||||||||    
T  43236695 atgtcctttcccaattagattctgccaggtcatcaccacctcactaatcatgtgccacgtcggtaattaaatgtgtttaggaccaaa 43236609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 369 - 503
Target Start/End: Original strand, 7982153 - 7982287
Alignment:
Q  369 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 468  Q
    |||||||||| ||||||||||||| ||  |  | ||||||| ||||  ||||||||| |||   | |||||||||  |||||||||  ||||||||||||    
T  7982153 tcattaagggcaaaatggtcatttcatgtgtcacttgttgactcatacatgtcctttcccaatcaaattctgccacatcatcaccacctcactaatcatg 7982252  T
Q  469 tgccacatatgtaatcaaatggtattaggaccaaa 503  Q
    |||||| |  ||||| |||||   |||||||||||    
T  7982253 tgccacgtcggtaattaaatgtgtttaggaccaaa 7982287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 7214404 - 7214333
Alignment:
Q  194 tcgacccaaggaagcgccgacacag-tgagccttgaaacggttcgaccgcgagggtggttgaatcacttaga 264  Q
    |||| |||||||||||||||| | | ||||||||||||||||||| | |||| |||||||||||||| ||||    
T  7214404 tcgatccaaggaagcgccgacgccggtgagccttgaaacggttcggcggcgacggtggttgaatcacataga 7214333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University