View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_41 (Length: 451)

Name: NF11278_high_41
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_41
NF11278_high_41
[»] chr5 (21 HSPs)
chr5 (20-447)||(37429269-37429705)
chr5 (30-309)||(37697462-37697741)
chr5 (30-309)||(37824570-37824849)
chr5 (30-309)||(37400018-37400297)
chr5 (30-309)||(37533775-37534054)
chr5 (30-309)||(37640547-37640826)
chr5 (30-309)||(37712299-37712578)
chr5 (30-309)||(37436382-37436661)
chr5 (75-239)||(37392209-37392373)
chr5 (49-309)||(37703343-37703603)
chr5 (30-239)||(37595069-37595278)
chr5 (60-148)||(37412512-37412600)
chr5 (376-442)||(37594866-37594932)
chr5 (72-159)||(37381583-37381670)
chr5 (376-442)||(37400364-37400430)
chr5 (376-442)||(37697329-37697395)
chr5 (376-442)||(37824437-37824503)
chr5 (205-442)||(37412657-37412894)
chr5 (385-442)||(37712166-37712223)
chr5 (394-442)||(37533642-37533690)
chr5 (398-442)||(37640414-37640458)
[»] chr4 (3 HSPs)
chr4 (26-309)||(16842078-16842361)
chr4 (20-109)||(24216936-24217025)
chr4 (273-337)||(24217189-24217253)
[»] chr3 (1 HSPs)
chr3 (51-239)||(14553783-14553971)


Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 37429705 - 37429269
Alignment:
Q  20 tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37429705 tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacaccgcc 37429606  T
Q  120 ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37429605 ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatgctgttcttcctctatctttgt 37429506  T
Q  220 ggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccacca-----ttattttcaaacctcacacacctcactacc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  37429505 ggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattattttcaaacctcacacacctcactacc 37429406  T
Q  315 tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttccttt----aataaccta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||    
T  37429405 tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtattttcctttaataaataaccta 37429306  T
Q  411 ataggccaagttccatcatcattgtttcatctcactc 447  Q
    | |||||||||||||||||||||||||||||| ||||    
T  37429305 acaggccaagttccatcatcattgtttcatctaactc 37429269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37697741 - 37697462
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| | ||    
T  37697741 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcaggtg 37697642  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | |||||||||||||| |  ||||   |||||   || |||||  ||||  |  |||||||||||||||||||||||||    
T  37697641 aaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttgatgggatggttcctctatctttgtggaacctcac 37697542  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
    |||||||||| | || || || || | ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37697541 tcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37697462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37824849 - 37824570
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| |||||||||||||||||||| | | |||| || || | ||    
T  37824849 gatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcaggtg 37824750  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  || |||||||||||||||||||||||||    
T  37824749 aaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttgatgggattgttcctctatctttgtggaacctcac 37824650  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
     ||||||||| | || ||||| ||    || ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37824649 ccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctcaaacacctca 37824570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 37400018 - 37400297
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | ||    
T  37400018 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtg 37400117  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    |||||||||||||||||||| | |||||||||||||| |  ||||   |||||   || |||||  ||||  |  |||||||||||||||||||||||||    
T  37400118 aaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctcac 37400217  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
     ||||||||| | || ||||| ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37400218 ccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37534054 - 37533775
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| | ||||||  ||||||||||  ||||||||  |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | ||    
T  37534054 gatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcaggtg 37533955  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | ||||||| |||||| || |||| |||||||  ||| |||||  ||||  |  |||||||||||||||||||||||||    
T  37533954 aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctcac 37533855  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
     ||||||||| | || || || ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37533854 ccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37533775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37640826 - 37640547
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| |||||||||||| |||||   |   |||| ||||| | ||    
T  37640826 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg 37640727  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  |||||||||||||||||||||||||    
T  37640726 aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcac 37640627  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
     ||||||||| | || ||||| ||   ||| ||  ||| |||||||||  |||||||| |||||||||||| ||||||||    
T  37640626 ccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaacacctca 37640547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37712578 - 37712299
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | ||    
T  37712578 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtg 37712479  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  ||||||||||||||||||| |||||    
T  37712478 aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctcac 37712379  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
     ||||||||| | || ||||| ||    || ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37712378 ccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37712299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37436661 - 37436382
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| |||||| |  ||||||||||  ||||||||  |||||||||||||||||| |||||||||||| |||||   |   |||| ||||| | ||    
T  37436661 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg 37436562  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | ||||||| |||||| || |||| ||||| |   || |||||  ||||  |  |||||||||||||||||||||||||    
T  37436561 aaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatctttgtggaacctcac 37436462  T
Q  230 tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
    |||||||||| | || ||||| || |  || ||  |||   |||||||| |||||||| ||||||||| | |||||||||    
T  37436461 tcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcacacctca 37436382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 37392209 - 37392373
Alignment:
Q  75 aactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttag 174  Q
    |||||||||||||| ||||||||||||||||| ||   ||   | ||||| | |||||||||| | || |||||| |||||||||||||||| || ||||    
T  37392209 aactggagcactcctctaaggtacttggacctatctggcatcactttctcaggtgaaattcccaaatctataggccatttgaagtatcttactcaattag 37392308  T
Q  175 gcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaaca 239  Q
     ||||||| | || |||||  ||||  |  |||||||||||||||||||||||||||||||||||    
T  37392309 tcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaaca 37392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 37703603 - 37703343
Alignment:
Q  49 accttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg 148  Q
    ||||||||||  ||||||||   |||||||||||| |||| ||||| |||||| ||||||| | | |||| || || | ||||||||| |||||||||||    
T  37703603 accttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcaggtgaaattccttattccatagg 37703504  T
Q  149 caatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagac 248  Q
      | ||||||| |||||| || |||| ||||||| | || |||||  ||||  |  ||||||||||||||||||| ||||| ||||||||| | || |||    
T  37703503 tcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctcacccaactaacatatttggac 37703404  T
Q  249 ctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
    || ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  37703403 ctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 37703343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 37595278 - 37595069
Alignment:
Q  30 gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg 129  Q
    |||||||| ||||||||  ||||||||||  ||||||||  |||||||| ||||||||| |||||||||||| |||||   |   |||| || || | ||    
T  37595278 gatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggtg 37595179  T
Q  130 aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac 229  Q
    ||||||| |||||||||||  | |||||||||||||| |  ||||   |||||   ||  ||||  ||||  |  |||||||||||||||||||||||||    
T  37595178 aaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgccatttagatgggatggttcctctatctttgtggaacctcac 37595079  T
Q  230 tcaactaaca 239  Q
     |||||||||    
T  37595078 ccaactaaca 37595069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 37412512 - 37412600
Alignment:
Q  60 aaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg 148  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||| ||||| |  |||   ||||| | ||||||||| |||||||||||    
T  37412512 aaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 37412600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37594932 - 37594866
Alignment:
Q  376 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | ||||||||    
T  37594932 aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct 37594866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 37381583 - 37381670
Alignment:
Q  72 tccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagt 159  Q
    |||||||||||||||||  | |||||||||||||||||   |||  | ||||| | ||||||||| |||||||||||| | |||||||    
T  37381583 tccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccataggccagttgaagt 37381670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 37400364 - 37400430
Alignment:
Q  376 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37400364 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37400430  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37697395 - 37697329
Alignment:
Q  376 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37697395 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37697329  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37824503 - 37824437
Alignment:
Q  376 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37824503 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37824437  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 442
Target Start/End: Original strand, 37412657 - 37412894
Alignment:
Q  205 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 304  Q
    |||||| |||||| ||||||||||||||||||||| | || ||||| ||   ||||||  |||  ||||| || ||| ||||| ||||||| ||| ||||    
T  37412657 ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca 37412756  T
Q  305 cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat 404  Q
     ||||||  ||| | ||||| | | |||  ||| | |||| |||||| | || ||||||| |||||||   |||||||| ||||||   |||||| |||     
T  37412757 tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac 37412856  T
Q  405 aacctaataggccaagttccatcatcattgtttcatct 442  Q
    ||| | | ||| ||| |||| ||||||||||| |||||    
T  37412857 aacattacaggtcaaattccctcatcattgttccatct 37412894  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 37712223 - 37712166
Alignment:
Q  385 atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37712223 atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37712166  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 37533690 - 37533642
Alignment:
Q  394 tttcctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||||| ||| ||||||| ||||||||||||||||||| | ||||||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37533642  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 37640458 - 37640414
Alignment:
Q  398 ctttaataacctaataggccaagttccatcatcattgtttcatct 442  Q
    |||||| ||||||| ||||||||||||||||||| | ||||||||    
T  37640458 ctttaacaacctaacaggccaagttccatcatcactttttcatct 37640414  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 309
Target Start/End: Original strand, 16842078 - 16842361
Alignment:
Q  26 actagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcg 125  Q
    ||||||||||||   |||| | |||||||||||  ||||||||   ||||||||||||||||| |||||||||||| |||||||  | ||||| |||||     
T  16842078 actagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctca 16842177  T
Q  126 gatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacc 225  Q
    |  |||||  |||||||||||||  | || |||| |||||| ||||||| |||||||   || |||||  ||||  |  |||||||||||||||||||||    
T  16842178 ggagaaatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacc 16842277  T
Q  226 tcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca 309  Q
    |||||||||||||| | || || || || | ||| ||  |||  ||||||||  |||||||| |||||||||||| ||||||||    
T  16842278 tcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca 16842361  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 24216936 - 24217025
Alignment:
Q  20 tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctc 109  Q
    |||| ||||||||||||| |  ||| | |||||| |||| ||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  24216936 tcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctc 24217025  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
Q  273 gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt 337  Q
    ||||| ||| ||||| ||||||||||||||||||||||| |||| | ||||  || |||||||||    
T  24217189 gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt 24217253  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 14553971 - 14553783
Alignment:
Q  51 cttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggca 150  Q
    ||||||||  ||||||||   ||||||||||| ||||| |||||||||||| |||||   ||| |||| ||||| | ||||||||| |||||||||||      
T  14553971 cttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcaggtgaaattccttattccataggtc 14553872  T
Q  151 atttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaaca 239  Q
    | ||||||| |||||| ||||||| ||||||| | || |||||  ||||  |  |||||||||||||||||||||||||||||||||||    
T  14553871 aattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaaca 14553783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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