View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_43 (Length: 442)

Name: NF11278_high_43
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_43
NF11278_high_43
[»] chr6 (4 HSPs)
chr6 (1-284)||(7326013-7326296)
chr6 (365-431)||(7326481-7326547)
chr6 (300-365)||(7326393-7326453)
chr6 (307-350)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (286-350)||(35130658-35130723)
chr4 (300-350)||(13538317-13538367)
chr4 (308-349)||(49479453-49479494)
chr4 (286-350)||(17882291-17882355)
chr4 (287-350)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (307-351)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (286-350)||(30746010-30746074)
chr7 (300-350)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (307-351)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (307-347)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (286-352)||(32594558-32594625)
chr3 (307-350)||(52093594-52093637)
chr3 (307-350)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (317-351)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7326013 - 7326296
Alignment:
Q  1 gaagtgaaagaaactagttggttcgaatggtaagaaattagatcaccttaaattagtggtcatgagtccaattttttgactctcgcataaaagaaaaaac 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  7326013 gaagtgaaaaaaactagttggttcgaatggtaagaaattagatcaccttaaattagtgatcatgagtccaattttttgagtctcgcataaaagaaaaaac 7326112  T
Q  101 tagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7326113 tagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatcta 7326212  T
Q  201 aaatgttgtttgctgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 284  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326213 aaatgttgtttgctgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 7326481 - 7326547
Alignment:
Q  365 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcat 7326547  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  300 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 365  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  286 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  300 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  308 aaattattcctgatagctaccaactgaactatacttacggga 349  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  286 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  287 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgggaca 351  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  286 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  300 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgggaca 351  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgg 347  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  286 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 352  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  307 caaattattcctgatagctaccaactgaactatacttacgggac 350  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  317 ctgatagctaccaactgaactatacttacgggaca 351  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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