View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_54 (Length: 410)
Name: NF11278_high_54
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40464791 - 40465026
Alignment:
| Q |
1 |
atcagcagggaaagatgtaatgatgagnnnnnnnngaaggtagtggactcaataaataaatgtaactaaaataaattgtcgcacacaaactaaacttaac |
100 |
Q |
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| T |
40464791 |
atcagcagggaaagatgtaatgatgagttttttt-gaaggtagtggactcaataattaaatgtaactaaaataaattgtcgcacacaaactagacttcac |
40464889 |
T |
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| Q |
101 |
aatgtagtaaatgaatgtttgaatctcgaatnnnnnnnntcgacagttaatgatgtatgacatatttcgaataaaagtatctttagtggagcttatttat |
200 |
Q |
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| T |
40464890 |
aatgtaacaaatgaatgtttgaatctcgaataaaaaaaatcgacagttaattatgtatgacatatttcgaataaaattatctttagtggagtttatttat |
40464989 |
T |
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| Q |
201 |
agtgaactaaaataaaaagttgtcgcaaaaagcttcc |
237 |
Q |
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| T |
40464990 |
agggaactaaaataaaaagttgtcgcaaaaagcttcc |
40465026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 40465088 - 40465182
Alignment:
| Q |
300 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagggaaaagnnnnnnncaagaagagagaacaaaag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40465088 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagggaaaagaaaaaaacaagaagagagaacaaaag |
40465182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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