View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_56 (Length: 404)
Name: NF11278_high_56
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 48482891 - 48483266
Alignment:
| Q |
18 |
tagcacacttgcaacaacttgtacaggaaccatgactttgtttacagatcacacaagtctggcaccaacgcggacaagaaagataggaaaaatgaatgtg |
117 |
Q |
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| T |
48482891 |
tagcacacttgcaacaacttgtacaggaaccatgactttgtttacagatcacacaagtctggcaccaacgcggacaagaaagatagaaaaaatgaatgtg |
48482990 |
T |
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| Q |
118 |
agtaaaagtgtaacacaactagaaaaggaccccaataacttgagtaaaaagtgttttgtataagtcatattgggtaatgaaataacgttggggaatggaa |
217 |
Q |
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| T |
48482991 |
agtaaaagtgtaacacaactagaaaaggaccccaataacttgagtaaaaagtgttttgtataagtcatattgggtaatgaaataacgttggggaatggaa |
48483090 |
T |
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| Q |
218 |
tgacnnnnnnnnnnnnnttatattgtataattgtcattttttataccccctgacagaattcatttagttatcaaaacaagcatgcaaattagttcctagc |
317 |
Q |
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| T |
48483091 |
tgacaaaaataaaaaaattatattgtatgattgtcattttttataccccccgacagaattcatttagttatcaaaacaagcatgcaaattagttcctagc |
48483190 |
T |
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| Q |
318 |
tactgctacaagaatattgcaggctagtagctaaaatcacctgacaacaaactgtcaagaaaaccttagcccctatg |
394 |
Q |
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| T |
48483191 |
tactgctacaagaatattgcaggctagtagctaaaatcacctgacaac-aactgtcaagaaaaccttagcccctatg |
48483266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 10037629 - 10037573
Alignment:
| Q |
22 |
acacttgcaacaacttgtacaggaaccatgactttgtttacagatcacacaagtctg |
78 |
Q |
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| T |
10037629 |
acacttgcaacaacttgtacaagaaccatggctttgtttacaaattacacaggtctg |
10037573 |
T |
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