View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_59 (Length: 393)

Name: NF11278_high_59
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_59
NF11278_high_59
[»] chr7 (3 HSPs)
chr7 (60-235)||(38984496-38984671)
chr7 (23-235)||(10582923-10583134)
chr7 (113-235)||(356897-357020)
[»] chr3 (1 HSPs)
chr3 (244-352)||(6786775-6786885)
[»] chr1 (3 HSPs)
chr1 (114-235)||(16465528-16465650)
chr1 (145-235)||(50249155-50249246)
chr1 (60-117)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (33-133)||(6762518-6762618)
[»] chr5 (1 HSPs)
chr5 (167-239)||(1265396-1265469)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 38984671 - 38984496
Alignment:
Q  60 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc 159  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  38984671 gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc 38984572  T
Q  160 ctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatgccctctgaatccgc 235  Q
    || ||||||||||| |||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||    
T  38984571 ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatccgc 38984496  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 10583134 - 10582923
Alignment:
Q  23 tacttggcgatgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc 122  Q
    ||||||| ||||||| |||||| |||||||| | ||||||||||||  ||||||||||||||||  |||| ||| |||| |||||| || ||||  ||||    
T  10583134 tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc 10583037  T
Q  123 tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatg 221  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||| || |||||| || ||||||||  ||||||||||    
T  10583036 tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatg 10582937  T
Q  222 ccctctgaatccgc 235  Q
    ||||||||||||||    
T  10582936 ccctctgaatccgc 10582923  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 357020 - 356897
Alignment:
Q  113 tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-t 211  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||| ||| |||||||      
T  357020 ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg 356921  T
Q  212 ggtgatgatgccctctgaatccgc 235  Q
    |||| |||||||||||||||||||    
T  356920 ggtgttgatgccctctgaatccgc 356897  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 6786885 - 6786775
Alignment:
Q  244 cctacttgaaaatgaagaatgtcatgaaatg-ttttgaataattt-cattaattcggtacagaaattagagactctagaagttccatgcttgcaaaactt 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  6786885 cctacttgaaaatgaagaatgtcatgaaatggttttgaataattttcattgattcagtacagaaattagagactctagaagttccatgtttgcaaaactt 6786786  T
Q  342 atgatgatcta 352  Q
    |||||||||||    
T  6786785 atgatgatcta 6786775  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 16465650 - 16465528
Alignment:
Q  114 ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaatg- 212  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||  || | |||||||||||||||||||||||| ||||||||| ||||||||||| |     
T  16465650 ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga 16465551  T
Q  213 gtgatgatgccctctgaatccgc 235  Q
    |||||||||||||||||||||||    
T  16465550 gtgatgatgccctctgaatccgc 16465528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 50249155 - 50249246
Alignment:
Q  145 aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatgccctctgaatccgc 235  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||  |||||||||||||| |||||||||    
T  50249155 aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgc 50249246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
Q  60 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt 117  Q
    |||||| |||||||||||| ||||||| ||||| |||||||| |||||  ||||||||    
T  50248348 gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt 50248405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 6762518 - 6762618
Alignment:
Q  33 tgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaaccctt 132  Q
    ||||||||| || |||||| | | || |||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6762518 tgtctttggtaacctccttctgagaacgagttcaaattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaaccctt 6762617  T
Q  133 t 133  Q
    |    
T  6762618 t 6762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 1265396 - 1265469
Alignment:
Q  167 actaaggttctaaaacttttggctttgaaataacctttttggaatgg-tgatgatgccctctgaatccgctgaa 239  Q
    |||| ||||||||||||||||| |||| |||  | ||||| ||| || ||||||||||||||||||||| ||||    
T  1265396 actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccgttgaa 1265469  T

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