View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_61 (Length: 391)
Name: NF11278_high_61
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 29819372 - 29819734
Alignment:
| Q |
11 |
cacagaatcgatgtcctctttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819372 |
cacagaatcgatgtcctctttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaa |
29819471 |
T |
|
| Q |
111 |
tcatgcatccccaatttattattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttcta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819472 |
tcatgcatccccaatttattattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttcta |
29819571 |
T |
|
| Q |
211 |
atatatctattactttatctatcttcattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819572 |
atatatctattactttatctatcttcattcccttgaagaaacacgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttc |
29819671 |
T |
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| Q |
311 |
cagtttatcttggattttacgtagaggcacacttcttannnnnnnaatggcactatgccaaag |
373 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29819672 |
cagtttatcttggattttacgtagaggcacacttcttatttttttaatggcactatgccaaag |
29819734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 29827625 - 29827952
Alignment:
| Q |
21 |
atgtcctctttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatcc |
120 |
Q |
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||||| |||||||||||||| ||||||| | |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
29827625 |
atgtcttctttagaccataatctgctacgtttgcctggatcatttggagattcctgaattacaatattccttcccatttcttgaagcaaatcatgcatcc |
29827724 |
T |
|
| Q |
121 |
ccaatttattattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctat |
220 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||| ||||||||||||||||||| ||| |
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| T |
29827725 |
ccagtttattattgacacgatctagagttatcaaagatctgtctatcaaaacttgaattgtaatttcggggtgatatccacaattttctaatatatttat |
29827824 |
T |
|
| Q |
221 |
tactttatctatcttcattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatct |
320 |
Q |
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|||||||||| |||||||||||||||||||||| | |||||| ||||||| || ||||||||| | ||||||||||||||||||||||| |||||||||| |
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| T |
29827825 |
tactttatctctcttcattcccttgaagaaacaggaaatatctagaaatatattcttctccatggcatctaagctctcataacttattttcagtttatct |
29827924 |
T |
|
| Q |
321 |
tggattttacgtagaggcacacttctta |
348 |
Q |
| |
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||||||| ||||||||| ||||||||| |
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| T |
29827925 |
tggatttcacgtagaggagcacttctta |
29827952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 29572650 - 29572347
Alignment:
| Q |
21 |
atgtcctctttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatcc |
120 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
29572650 |
atgtcctcttgagaccacaacctgctacgtctacaaggatcatttggagattcctgaaatacaatatccctgcccatttcttgaagcaaatcatgcattc |
29572551 |
T |
|
| Q |
121 |
ccaatttattattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctat |
220 |
Q |
| |
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||||||||||||| || ||||||||||||||| ||||| |||||||||| ||||||| ||||| |||||||| |||||| |||||||||||||||| |
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| T |
29572550 |
ccaatttattattcacagaatctagagttatcaatgatctttcaatcaaaatttgaattccaatttgagggaaatagccacaactttctaatatatctat |
29572451 |
T |
|
| Q |
221 |
tactttatctatcttcattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatct |
320 |
Q |
| |
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||||||||| |||||||||||| |||||||| |||||||| ||||| | |||||||||||| | |||||| || ||||||||||||| ||| |||||| |
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| T |
29572450 |
aactttatctcccttcattcccttaaagaaacaagcaatatctagaaaaatatccttctccatggtatctaaactatcataacttattttcaggttatct |
29572351 |
T |
|
| Q |
321 |
tgga |
324 |
Q |
| |
|
|||| |
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|
| T |
29572350 |
tgga |
29572347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 35686399 - 35686356
Alignment:
| Q |
81 |
acaatattcctgcccatttcttgaagcaaatcatgcatccccaa |
124 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| |
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| T |
35686399 |
acaatatttctacccatttcttgaagcaaatcatgcatccccaa |
35686356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 11123611 - 11123847
Alignment:
| Q |
32 |
agaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaatttatta |
131 |
Q |
| |
|
|||||||||||| || | | | |||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
11123611 |
agaccataacctactgcgttttccaggatcatttggagattcttcaaacacaatattccttcccatttcttgaagcaaatcatgcatccacaacttattg |
11123710 |
T |
|
| Q |
132 |
ttgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatcta |
231 |
Q |
| |
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| ||| ||| | |||| ||||||||| |||||||||| | |||| ||||||||| |||||||||| |||||| || |||||||||| ||||| |
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| T |
11123711 |
tcccccctatccaaagttgccaaagatctttcaatcaaaatgtcaattccaattttgggatgataaccacaaccttctaaaatttctattacttcatcta |
11123810 |
T |
|
| Q |
232 |
tcttcattcccttgaagaaacatgcaatatcaagaaa |
268 |
Q |
| |
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| | |||||| |||||||||||||||||||| ||||| |
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| T |
11123811 |
tgtccattcctttgaagaaacatgcaatatctagaaa |
11123847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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