View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_high_71 (Length: 363)
Name: NF11278_high_71
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 44893172 - 44892855
Alignment:
| Q |
1 |
agagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaaagacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44893172 |
agagaatacagtataattgaaacatactttttagtttagattcaacattcaaccgtgaaacaattactcccatatagtagtgggataaaagtgaaagacc |
44893073 |
T |
|
| Q |
101 |
gtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgagaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44893072 |
gtctttgttcccgtcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgggggctctctcctgagaaaat |
44892973 |
T |
|
| Q |
201 |
tccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgatttcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44892972 |
tccaaagctaacccacgaagttctttaataggtgccggtgctccacagtaaaacactcctgcatattgaaataggttcagatcttcaataacgatttcag |
44892873 |
T |
|
| Q |
301 |
tgcattcaatgaatactc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44892872 |
tgcattcaatgaatactc |
44892855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 44918533 - 44918418
Alignment:
| Q |
149 |
ctagaaattctccttgtgaaaatcaaatttgggggctctctcctgagaaaattccaaagctaacccacgaagttctttaataggtgccggtgctccacag |
248 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| || | | | |||||||| ||| || |||| |||||| |||||| || |||| |||| |||||| |
|
|
| T |
44918533 |
ctagaaattctccttgtggaaatcatatttggtggttgtgttgtgagaaaagtccgaacctaattgacgaagctctttagtaagtgcaggtggcccacag |
44918434 |
T |
|
| Q |
249 |
taaaacactcctgcat |
264 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
44918433 |
taaaacacccctgcat |
44918418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 44902044 - 44901980
Alignment:
| Q |
114 |
tcctttttgatcttcaataattaatgtttatctttctagaaattctccttgtgaaaatcaaatttgg |
180 |
Q |
| |
|
||||||||| ||||||| ||| ||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
44902044 |
tcctttttg-tcttcaacaat-aatgtccatctgtctagaaattctccttgtggaaatcaaatttgg |
44901980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University