View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_high_76 (Length: 352)
Name: NF11278_high_76
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_76 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 45336297 - 45336628
Alignment:
| Q |
9 |
agaagaaaacattaaaaagatgaaagggaacatggtggtgcatttacaaaatccacagtagcaaaatgtaacattaattaaacaagtacataagatacaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336297 |
agaagaaaacattaaaaagatgaaagggaacatggtggtgcatttacaaaatccagagtagcaaaatgtaacattaattaaacaagtacataagatacaa |
45336396 |
T |
|
| Q |
109 |
gacaccaattttattt---tatttttggaatatagtctttgattctaacactgaaagaccttctaaatttgatagtcattaatagttgatgcttggagtc |
205 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336397 |
gacaccaattttttttatttttttttggaatatagtctttgattctaacactgaaagaccttctaaatttgatagtcattaatagttgatgcttggagtc |
45336496 |
T |
|
| Q |
206 |
tgatttgcttattgaatttctgaataaactcttccaacctcttattgcgatcctcattcgacatcttagaaaactcatttgcttctacttttggttctat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
45336497 |
tgatttgcttattgaatttctgaataaactcttccacactcttattgcgatcctcattcgacatcttagaaaactcattttcttctacttttagttctat |
45336596 |
T |
|
| Q |
306 |
cttcatgtaatctaaccttctcactgaattct |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45336597 |
cttcatgtaatctaaccttctcactgaattct |
45336628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 126 - 332
Target Start/End: Original strand, 6184704 - 6184922
Alignment:
| Q |
126 |
atttttggaatatagtctttgattctaacactgaaa-gaccttctaaatttgatagtcattaat--------agttgatgcttggagtctgatttgctta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |||||||||||| | |||| || |||||||||||| ||||| ||||||||| |
|
|
| T |
6184704 |
atttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattgattaatttatagttgatgcttgaagtctaatttgctta |
6184803 |
T |
|
| Q |
217 |
ttgaatttctgaataaactcttccaacctcttattgcgatcctcattcgacatcttagaaaactcatt---tgcttctacttttggttctatcttcatgt |
313 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| |||| ||||| |||||||||||||||||||| | |||||| ||||||||| |||||||| |
|
|
| T |
6184804 |
ttgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttcttcttctatttttggttccatcttcatag |
6184903 |
T |
|
| Q |
314 |
aatctaaccttctcactga |
332 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
6184904 |
actctaaccttctcactga |
6184922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University