View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_79 (Length: 340)
Name: NF11278_high_79
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 33537087 - 33537403
Alignment:
| Q |
6 |
aggagcagagacctctgaaggtcaaggtttgattccttcattatttatagtcaaaacaattatgttaaaagaagttatggtatttatatttaatcctaga |
105 |
Q |
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| T |
33537087 |
aggagcaaagacctctgaaggtcaaggtttgattctttcattatttatagtcaaaacaattatgttaaaagaagttatggtatttatatttaatcctaga |
33537186 |
T |
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| Q |
106 |
ctagtgtacaatgttaaagaagttgcaaaatagacttgcctaacaagtaacaataatttcaacnnnnnnncatgttgttggtatataactatttttgaca |
205 |
Q |
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| T |
33537187 |
ctagtgtacaatgttaaagaagttgcaaaatagacttgcctaacaagtaacaataatttcaactttttttcatgttgttggtatataactatttttgaca |
33537286 |
T |
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| Q |
206 |
gaattttgttgaattctaataaatataactatggatgcagataacggtaataatagtgacaccaatagagtaaaaggagacaccaatagtgtaaaaggag |
305 |
Q |
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| T |
33537287 |
gaattttgttgaattctaataaatataactatggatgcagataacggtaataatagtgacaccaatagagtaaaaggagacaccaatagtgtaaaaggag |
33537386 |
T |
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| Q |
306 |
aagggaagagaaacagc |
322 |
Q |
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||||||||||||||||| |
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| T |
33537387 |
aagggaagagaaacagc |
33537403 |
T |
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