View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_81 (Length: 334)
Name: NF11278_high_81
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_81 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 49654818 - 49654520
Alignment:
| Q |
17 |
cattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654818 |
cattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaac |
49654719 |
T |
|
| Q |
117 |
atagtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654718 |
atagtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtac |
49654619 |
T |
|
| Q |
217 |
gattgctgacgtgtagggctgagattcacttgccccacaacctgacctggacactggaattctgctccagtgtctgcaggtgcaccagtagatgctgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
49654618 |
gattgctgacgtgtagggctgagattcacttgccccacaacctgacctggacactggaattctgctccagtgtgtgcaggtgcaccggtagatgctgaa |
49654520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 16486465 - 16486263
Alignment:
| Q |
17 |
cattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaac |
116 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |
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| T |
16486465 |
cattttcatcaccgaagaacccaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaac |
16486366 |
T |
|
| Q |
117 |
atagtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtac |
216 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16486365 |
atagtaagaaggacaacccattgttcgaatgggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtac |
16486266 |
T |
|
| Q |
217 |
gat |
219 |
Q |
| |
|
||| |
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|
| T |
16486265 |
gat |
16486263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 21816445 - 21816647
Alignment:
| Q |
17 |
cattttcatcactgaagaactcaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaac |
116 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |
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| T |
21816445 |
cattttcatcaccgaagaacccaaagggaatcaaaggtgtagattgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaac |
21816544 |
T |
|
| Q |
117 |
atagtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21816545 |
atagtaagaaggacaacccattgttcgaatgggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtac |
21816644 |
T |
|
| Q |
217 |
gat |
219 |
Q |
| |
|
||| |
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|
| T |
21816645 |
gat |
21816647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 248
Target Start/End: Original strand, 14381448 - 14381479
Alignment:
| Q |
217 |
gattgctgacgtgtagggctgagattcacttg |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381448 |
gattgctgacgtgtagggctgagattcacttg |
14381479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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