View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_high_86 (Length: 327)

Name: NF11278_high_86
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_high_86
NF11278_high_86
[»] chr4 (21 HSPs)
chr4 (21-310)||(28165270-28165558)
chr4 (125-194)||(9802661-9802730)
chr4 (130-187)||(12103890-12103947)
chr4 (127-174)||(31871102-31871149)
chr4 (131-186)||(39727605-39727659)
chr4 (127-186)||(44647928-44647987)
chr4 (127-174)||(53919880-53919927)
chr4 (125-174)||(33982437-33982486)
chr4 (125-186)||(40480215-40480276)
chr4 (138-186)||(25196136-25196184)
chr4 (132-186)||(34235912-34235967)
chr4 (138-191)||(51230092-51230145)
chr4 (131-186)||(24395247-24395303)
chr4 (127-186)||(49446640-49446700)
chr4 (130-174)||(50115059-50115103)
chr4 (127-174)||(44646572-44646619)
chr4 (136-186)||(27706953-27707003)
chr4 (125-179)||(42197042-42197096)
chr4 (127-175)||(1696235-1696283)
chr4 (138-186)||(27346298-27346346)
chr4 (130-186)||(54543570-54543626)
[»] chr8 (15 HSPs)
chr8 (125-186)||(5020097-5020158)
chr8 (127-203)||(5217805-5217880)
chr8 (150-186)||(20169788-20169824)
chr8 (127-187)||(38956883-38956943)
chr8 (132-186)||(36819733-36819788)
chr8 (127-186)||(45368770-45368829)
chr8 (130-179)||(33636725-33636774)
chr8 (127-186)||(31206310-31206369)
chr8 (132-186)||(7044383-7044437)
chr8 (132-186)||(39932729-39932783)
chr8 (125-166)||(42022638-42022679)
chr8 (130-186)||(15352120-15352176)
chr8 (127-174)||(22601011-22601059)
chr8 (127-183)||(27633505-27633560)
chr8 (130-166)||(35592459-35592495)
[»] chr1 (19 HSPs)
chr1 (137-186)||(31745464-31745513)
chr1 (130-186)||(4039652-4039708)
chr1 (130-186)||(5115656-5115712)
chr1 (127-186)||(25095609-25095668)
chr1 (127-174)||(50974621-50974668)
chr1 (132-186)||(45753450-45753504)
chr1 (130-186)||(34445669-34445725)
chr1 (132-179)||(28171534-28171581)
chr1 (127-166)||(31652642-31652681)
chr1 (131-186)||(45584539-45584594)
chr1 (125-186)||(12636353-12636414)
chr1 (130-166)||(40203128-40203164)
chr1 (138-186)||(40377042-40377090)
chr1 (131-174)||(7549855-7549898)
chr1 (132-186)||(5597716-5597770)
chr1 (127-185)||(46895933-46895991)
chr1 (130-174)||(5787492-5787536)
chr1 (138-194)||(28672346-28672402)
chr1 (139-187)||(44719180-44719228)
[»] chr2 (18 HSPs)
chr2 (138-186)||(8773731-8773779)
chr2 (138-186)||(8789856-8789904)
chr2 (127-203)||(4238372-4238449)
chr2 (130-179)||(6761776-6761825)
chr2 (127-203)||(44941128-44941205)
chr2 (138-186)||(2393098-2393146)
chr2 (127-198)||(18053064-18053136)
chr2 (132-186)||(13442631-13442685)
chr2 (138-186)||(433568-433616)
chr2 (140-192)||(11742165-11742217)
chr2 (138-186)||(45212057-45212105)
chr2 (127-186)||(20683044-20683103)
chr2 (132-179)||(33275945-33275992)
chr2 (140-186)||(8898861-8898907)
chr2 (138-179)||(3199546-3199587)
chr2 (130-187)||(42945064-42945121)
chr2 (138-178)||(1070568-1070608)
chr2 (130-174)||(12075572-12075616)
[»] chr7 (11 HSPs)
chr7 (127-174)||(38452183-38452230)
chr7 (125-186)||(8170031-8170092)
chr7 (127-186)||(47507610-47507669)
chr7 (150-186)||(44391498-44391534)
chr7 (149-187)||(2964048-2964086)
chr7 (138-180)||(48137789-48137831)
chr7 (137-174)||(5248107-5248144)
chr7 (127-186)||(2741173-2741232)
chr7 (125-166)||(35567134-35567175)
chr7 (138-186)||(42493708-42493757)
chr7 (130-186)||(37352461-37352517)
[»] chr5 (22 HSPs)
chr5 (125-187)||(21582371-21582433)
chr5 (130-186)||(37976448-37976504)
chr5 (127-186)||(8247067-8247126)
chr5 (127-186)||(28793335-28793394)
chr5 (138-186)||(14042463-14042511)
chr5 (131-194)||(1354399-1354462)
chr5 (127-186)||(10051730-10051789)
chr5 (139-186)||(22871920-22871967)
chr5 (127-186)||(35395188-35395247)
chr5 (132-186)||(8761927-8761981)
chr5 (130-179)||(26663642-26663691)
chr5 (130-179)||(26935237-26935286)
chr5 (131-175)||(14475051-14475095)
chr5 (132-164)||(24241064-24241096)
chr5 (131-179)||(24241208-24241256)
chr5 (131-186)||(31889615-31889671)
chr5 (127-174)||(3263759-3263806)
chr5 (128-174)||(4725892-4725937)
chr5 (130-179)||(27016678-27016727)
chr5 (125-161)||(142400-142436)
chr5 (130-186)||(1031717-1031773)
chr5 (138-174)||(12933345-12933381)
[»] chr3 (18 HSPs)
chr3 (132-186)||(43749526-43749580)
chr3 (138-186)||(38388712-38388760)
chr3 (138-186)||(779733-779781)
chr3 (138-186)||(1680516-1680564)
chr3 (127-187)||(4033030-4033090)
chr3 (127-186)||(18399206-18399266)
chr3 (127-179)||(38704997-38705049)
chr3 (127-175)||(53433233-53433281)
chr3 (131-179)||(54912049-54912097)
chr3 (125-186)||(17753602-17753665)
chr3 (125-186)||(19054922-19054985)
chr3 (132-179)||(30464009-30464056)
chr3 (132-174)||(11404718-11404760)
chr3 (132-169)||(19898154-19898191)
chr3 (137-186)||(34758929-34758978)
chr3 (132-173)||(37775370-37775411)
chr3 (132-195)||(2831537-2831601)
chr3 (131-186)||(25548249-25548305)
[»] chr6 (6 HSPs)
chr6 (138-186)||(16442080-16442128)
chr6 (127-187)||(7465476-7465536)
chr6 (132-174)||(12307837-12307879)
chr6 (130-186)||(6048320-6048376)
chr6 (127-186)||(8176326-8176385)
chr6 (132-166)||(24616292-24616326)
[»] scaffold0246 (1 HSPs)
scaffold0246 (125-186)||(18154-18215)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 28165558 - 28165270
Alignment:
Q  21 tagtaagaatagaaaaataaagagctaatgatgtgttcaatgaatattaaaaaatgggaaatgttaaccaatgttcctgagacattagttaaggatttta 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||    
T  28165558 tagtaggaatagaaaaataaagagctaatgatgtgttcaatgaatattaaaaaataggaaatgttaatcaatgtccctgagacactagttaaggatttta 28165459  T
Q  121 aatggtatcggaaattgaaatatttga-cttttttataaaataatttattcttttagaatctttaaa-agtgtctca-ggacactc---aacaagaccct 214  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||   |||||||||||    
T  28165458 aatggtatcggaaattgaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagaccct 28165359  T
Q  215 ttaaaaattatgagtgtacaaatatcatttgtttttcacaaaataatactcaaccggtggtctcgctttctcattctcattggtgggtttatgaag 310  Q
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28165358 -------ttatgagtgtacaaatatcatttgtttttcacaaaatagtactcaaccggtggtctcgctttctcattctcattggtgggtttatgaag 28165270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 9802661 - 9802730
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaagtgtctc 194  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||||||| || || ||||||||    
T  9802661 gtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaattttaaagagtgtctc 9802730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 12103890 - 12103947
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  12103890 ggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaa 12103947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 31871102 - 31871149
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31871102 atcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 39727605 - 39727659
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  39727605 gaaattgaaatatttgacttttt-atagaataatttattcttttagaatccttaaa 39727659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 44647928 - 44647987
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||||||| ||| |||||||||| ||| ||||||| |||||||||||    
T  44647928 atcggaaattgaaatatttgattttattataaaatagtttcttcttttggaatctttaaa 44647987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 53919927 - 53919880
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  53919927 atcggaaattgaaatttttgacttttttatagaataatttattctttt 53919880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 33982486 - 33982437
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  33982486 gtatcggaaatcgaaatatttaacttttttataaaataattttttctttt 33982437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 40480215 - 40480276
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||| |||||    
T  40480215 gtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaa 40480276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 25196184 - 25196136
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  25196184 aaatatttgacttttttataaattaattttttcttttagaatccttaaa 25196136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 34235967 - 34235912
Alignment:
Q  132 aaattgaaatatttgactttttt-ataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||    
T  34235967 aaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaa 34235912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 51230145 - 51230092
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaaagtgt 191  Q
    ||||||||||||||| ||||||||||||| || ||||  |||||||||||||||    
T  51230145 aaatatttgacttttatataaaataatttcttattttgtaatctttaaaagtgt 51230092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 24395247 - 24395303
Alignment:
Q  131 gaaattgaaatatttgac-ttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||| |||||||||||| ||||||||||| |||||| ||||||||||||| |||||    
T  24395247 gaaatcgaaatatttgaccttttttataaattaatttcttcttttagaatccttaaa 24395303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 49446640 - 49446700
Alignment:
Q  127 atcggaaattgaaatatttgac-ttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| |||||||||||| ||||||||||||||| || ||||||| ||||| |||||    
T  49446640 atcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaatccttaaa 49446700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 50115103 - 50115059
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||    
T  50115103 ggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 44646572 - 44646619
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||||||    
T  44646572 atcggaaatcgaaatatttgactttattataaaatagtttcttctttt 44646619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 27706953 - 27707003
Alignment:
Q  136 tgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706953 tgaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 42197096 - 42197042
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||| ||||  |||||||||| ||||| |||||||||||| ||||||||||||    
T  42197096 gtatcgaaaatcaaaatatttgattttttaataaaataatttcttcttttagaat 42197042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 1696235 - 1696283
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttta 175  Q
    |||||||||||||||||||| |||||||||  |||||| | ||||||||    
T  1696235 atcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 27346346 - 27346298
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| ||||||||||||||||||||| || || |||||||||| |||||    
T  27346346 aaatctttgacttttttataaaataaattctttttttagaatccttaaa 27346298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 54543626 - 54543570
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||| ||||  ||||||||| ||||||||| | |||||||||| ||||||    
T  54543626 ggaaattgaaacattttgcttttttatgaaataatttctccttttagaatatttaaa 54543570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 5020097 - 5020158
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||    
T  5020097 gtatcggaaattgaaatctttgacttttttataaaattatttcttcttttagaatccttaaa 5020158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 5217805 - 5217880
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa-agtgtctcaggacactc 203  Q
    ||||||||| ||||||||||||||||||||||||| ||||||  |||| ||||| ||||| |||||| ||||||||||    
T  5217805 atcggaaatcgaaatatttgacttttttataaaatcatttat--tttttgaatccttaaagagtgtcccaggacactc 5217880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 20169788 - 20169824
Alignment:
Q  150 tttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  20169788 tttttataaaataatttattcttttagaatctttaaa 20169824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 38956943 - 38956883
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    ||||||||| ||||||||||||||||||||||| |||||   |||||||||||| ||||||    
T  38956943 atcggaaatcgaaatatttgacttttttataaattaattacatcttttagaatccttaaaa 38956883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 36819733 - 36819788
Alignment:
Q  132 aaattgaaatatttgactttt-ttataaaataatttattcttttagaatctttaaa 186  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  36819733 aaattaaaatatttgattttttttataaaataattttttcttttagaatctttaaa 36819788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 45368770 - 45368829
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| |||||||||||||| |||||||||||||||||||| || |||| ||||| |||||    
T  45368770 atcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaaa 45368829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 33636774 - 33636725
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  33636774 ggaaattgaaacatttgacttttttatgaaataatttctccttttagaat 33636725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 31206369 - 31206310
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||  |||||||||| |||||||||||||||||| | ||||| ||||| |||||    
T  31206369 atcggaaatcaaaatatttgatttttttataaaataatttctactttttgaatccttaaa 31206310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 7044383 - 7044437
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| ||||| ||||||||||| ||||| |||||| ||||||||||||| |||||    
T  7044383 aaatcgaaatgtttgactttttaataaattaatttcttcttttagaatccttaaa 7044437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 39932729 - 39932783
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||||  ||| |||  |||||||||||| ||||||    
T  39932729 aaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaa 39932783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 42022638 - 42022679
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataattt 166  Q
    |||| |||||||||| ||||||||||||||| ||||||||||    
T  42022638 gtattggaaattgaactatttgacttttttaaaaaataattt 42022679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 15352120 - 15352176
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||| ||||||||||||||| | |||||||| ||  |||||||| ||||||    
T  15352120 ggaaattgaactatttgacttttttacagaataattttttaatttagaatgtttaaa 15352176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 22601059 - 22601011
Alignment:
Q  127 atcggaaattgaaatatttgactttttt-ataaaataatttattctttt 174  Q
    |||| |||||||| |||||||||||||| |||||||||||| |||||||    
T  22601059 atcgtaaattgaagtatttgacttttttaataaaataatttcttctttt 22601011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27633560 - 27633505
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatcttt 183  Q
    ||||||||||||||||||||| ||||||||  |||||||| |||||||  |||||||    
T  27633560 atcggaaattgaaatatttgatttttttattgaataattt-ttcttttgaaatcttt 27633505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 35592495 - 35592459
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataattt 166  Q
    ||||||||||||||||||||||||||  |||||||||    
T  35592495 ggaaattgaaatatttgacttttttacgaaataattt 35592459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 31745464 - 31745513
Alignment:
Q  137 gaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31745464 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 31745513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 4039652 - 4039708
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  4039652 ggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaa 4039708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 5115656 - 5115712
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  5115656 ggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaa 5115712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 25095668 - 25095609
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  25095668 atcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaa 25095609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 50974621 - 50974668
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  50974621 atcgaaaattgaaatatttgacttttttataaaataattttttctttt 50974668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 45753504 - 45753450
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||    
T  45753504 aaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaa 45753450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 34445725 - 34445669
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||| ||||| |||||    
T  34445725 ggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaa 34445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 28171534 - 28171581
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  28171534 aaattgaaatatttaacttttttataaaataattttttctttttgaat 28171581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 31652681 - 31652642
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataattt 166  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  31652681 atcggaaattaaaatatttgacttttttataaaataattt 31652642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 45584594 - 45584539
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||| |||||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  45584594 gaaattaaaatatttaacttttttataaaataatttcttcttttggaatccttaaa 45584539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 12636353 - 12636414
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| |||||| |||||| |||||||||| ||||||| |||||||||||| ||||| |||||    
T  12636353 gtataggaaatcgaaatacttgactttttaataaaattatttattcttttggaatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 40203128 - 40203164
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataattt 166  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40203128 ggaaattgaaatatttgacttttttatgaaataattt 40203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 40377090 - 40377042
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||| |||| ||||||| ||||| |||||    
T  40377090 aaatatttgacttttttataaaattatttcttcttttggaatccttaaa 40377042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 7549898 - 7549855
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||    
T  7549898 gaaatcgaaatatttgacttttttataaaattatttcttctttt 7549855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 5597770 - 5597716
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||| ||| ||||||    
T  5597770 aaattaaaatatttaacttttttatagaataatttcttcttttaaaatatttaaa 5597716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 46895991 - 46895933
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaa 185  Q
    |||||||||||||||||| |||||||| |  ||||||||| ||  ||||||||||||||    
T  46895991 atcggaaattgaaatattagactttttcaataaataatttcttaatttagaatctttaa 46895933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 5787492 - 5787536
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    |||||||||||||||| ||| |||||||||||| ||| |||||||    
T  5787492 ggaaattgaaatatttaactattttataaaatattttcttctttt 5787536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 28672346 - 28672402
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaaagtgtctc 194  Q
    |||||||||||||||||| |||||||||  || |||||||||  |||| ||||||||    
T  28672346 aaatatttgacttttttaaaaaataattgtttattttagaatgcttaagagtgtctc 28672402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 44719228 - 44719180
Alignment:
Q  139 aatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    ||||||| |||||||||||||||||| |||| |||| ||||| ||||||    
T  44719228 aatatttaacttttttataaaataatatatttttttggaatccttaaaa 44719180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 8773731 - 8773779
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8773731 aaatatttgacttttttataaaataatttcttcttttagaatctttaaa 8773779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 8789904 - 8789856
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  8789904 aaatatttaacttttttataaaataatttcttcttttagaatctttaaa 8789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 4238372 - 4238449
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa-agtgtctcaggacactc 203  Q
    |||| |||| ||||||||||| |||||||||||||||||| ||||||| ||||| ||||| |||||| | ||||||||    
T  4238372 atcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtcccgggacactc 4238449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 6761776 - 6761825
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  6761776 ggaaattgaaatatttgacttttttatagaatgatttattcttttggaat 6761825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 44941128 - 44941205
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa-agtgtctcaggacactc 203  Q
    ||||||||| ||||| ||| |||||||||||| ||| ||| ||||||||||||| ||||| ||||||||||| |||||    
T  44941128 atcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatccttaaagagtgtctcagggcactc 44941205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 2393098 - 2393146
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  2393098 aaatatttgacttttttataaattaatttcttcttttagaatccttaaa 2393146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 18053064 - 18053136
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa-agtgtctcagga 198  Q
    |||||||||  ||||||||||||||||||||||||||||| |||||||  |||| ||||| |||||| |||||    
T  18053064 atcggaaatcaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagtgtcccagga 18053136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 13442631 - 13442685
Alignment:
Q  132 aaattgaaatatttgactttt-ttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  13442631 aaattgaaatatttaactttttttataaaataatttattctttt-gaatctttaaa 13442685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 433568 - 433616
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||| ||||||||||||| |||||||||||||| ||||| |||||    
T  433568 aaatatttaacttttttataaattaatttattcttttggaatccttaaa 433616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 11742165 - 11742217
Alignment:
Q  140 atatttgacttttttataaaataatttattcttttagaatctttaaaagtgtc 192  Q
    |||||||||||||||||| |||||||| || ||||| |||| |||||||||||    
T  11742165 atatttgacttttttatagaataatttctttttttaaaatccttaaaagtgtc 11742217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 45212105 - 45212057
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||| ||||||||||||||||||||  |||||||||| |||||    
T  45212105 aaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 20683044 - 20683103
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| ||||||||||| |||||||||||||  ||| ||||||| ||||| |||||    
T  20683044 atcggaaatcgaaatatttgatttttttataaaatcttttcttcttttggaatccttaaa 20683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 33275945 - 33275992
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||||||| ||||||||| |||||||||| || |||||||||    
T  33275945 aaattgaaatatttaacttttttaaaaaataatttcttgttttagaat 33275992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 8898861 - 8898907
Alignment:
Q  140 atatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||| |||||||||||||| || |||||||||| |||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaa 8898907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 3199546 - 3199587
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||| |||||||||||||||||| || |||||||||    
T  3199546 aaatatttgaattttttataaaataatttcttattttagaat 3199587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 42945064 - 42945121
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    |||||| ||||||||||| ||||| |||||||||| | |||||||| |||| ||||||    
T  42945064 ggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaaatccttaaaa 42945121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 1070608 - 1070568
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaa 178  Q
    |||||||| ||||| |||||||||||| |||||||||||||    
T  1070608 aaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 12075572 - 12075616
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||||||||||||||||| ||| ||||| ||| |||||||    
T  12075572 ggaaattgaaatatttgacttttgtatgaaatagtttcttctttt 12075616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 38452230 - 38452183
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  38452230 atcggaaattgaaatatttgacttttttataaaataatttcttctttt 38452183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 8170092 - 8170031
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  8170092 gtatcggaaatcaaaatatttgacttttttataaaataatttcttcttttggaatccttaaa 8170031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 47507669 - 47507610
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||| |||||    
T  47507669 atcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaa 47507610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 44391498 - 44391534
Alignment:
Q  150 tttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  44391498 tttttataaaataatttattcttttagaatctttaaa 44391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 2964086 - 2964048
Alignment:
Q  149 ttttttataaaataatttattcttttagaatctttaaaa 187  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2964086 ttttttataaaataatttcttcttttagaatctttaaaa 2964048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 48137831 - 48137789
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatc 180  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  48137831 aaatatttgacttttttataaaataatttcttcttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 5248144 - 5248107
Alignment:
Q  137 gaaatatttgacttttttataaaataatttattctttt 174  Q
    |||||||||||||||||||||||||||||| |||||||    
T  5248144 gaaatatttgacttttttataaaataatttcttctttt 5248107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 2741232 - 2741173
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||  |||||||||| ||||| |||||||||||| |||||||| |||| |||||    
T  2741232 atcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaa 2741173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 35567175 - 35567134
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataattt 166  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  35567175 gtattggaaattaaaatatttgacttttttaaaaaataattt 35567134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 42493757 - 42493708
Alignment:
Q  138 aaatatttgacttttttat-aaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  42493757 aaatatttgacttttttatcaaaataatttcttcttttggaatccttaaa 42493708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 37352461 - 37352517
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||| ||  |||||||| || |||| ||||| |||||    
T  37352461 ggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaa 37352517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 21582433 - 21582371
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  21582433 gtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaa 21582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 37976504 - 37976448
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||    
T  37976504 ggaaattgaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaa 37976448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 8247126 - 8247067
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| |||||    
T  8247126 atcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaa 8247067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 28793394 - 28793335
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| |||||    
T  28793394 atcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaaa 28793335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 14042511 - 14042463
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  14042511 aaatatttgacttttttaaataataatttattattttagaatctttaaa 14042463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 1354399 - 1354462
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaagtgtctc 194  Q
    ||||| ||||||||| |||||||||||||||||||| || |||||||||  |||| ||||||||    
T  1354399 gaaatcgaaatatttaacttttttataaaataatttctttttttagaattcttaagagtgtctc 1354462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 10051789 - 10051730
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||  |||||||||||||||||||||||| |||| |||||||| |||| |||||    
T  10051789 atcggaaatataaatatttgacttttttataaaattatttcttcttttaaaatccttaaa 10051730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 22871967 - 22871920
Alignment:
Q  139 aatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaa 22871920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 35395247 - 35395188
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  35395247 atcgaaaattaaaatatttgacttttttataaaatagtttcttcttttggaatccttaaa 35395188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 8761981 - 8761927
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||| ||||||||||| |||||||| || |||||||||| |||||    
T  8761981 aaattgaaatatttaacttttttatagaataatttctttttttagaatccttaaa 8761927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 26663691 - 26663642
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||| ||||||||||||||||||| |||||||||| || |||||||||    
T  26663691 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 26935286 - 26935237
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||| ||||||||||||||||||| |||||||||| || |||||||||    
T  26935286 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 14475051 - 14475095
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattctttta 175  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||    
T  14475051 gaaattgaaatatttgacatttttatagaataatttcttctttta 14475095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 24241064 - 24241096
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataat 164  Q
    |||||||||||||||||||||||||||||||||    
T  24241064 aaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 24241208 - 24241256
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    ||||| |||||||||||||||||  ||||||||||| ||||||||||||    
T  24241208 gaaatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 31889671 - 31889615
Alignment:
Q  131 gaaattgaaatatttgactttttt-ataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||| |||||||| ||||| |||||| ||||||||||||| |||||    
T  31889671 gaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaa 31889615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 3263806 - 3263759
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||||||| ||||| ||||||||||||||||||| |||| |||||||    
T  3263806 atcggaaatcgaaatctttgacttttttataaaatgatttcttctttt 3263759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 4725892 - 4725937
Alignment:
Q  128 tcggaaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||    
T  4725892 tcggaaatcgaaatctttgactttt-tataaaataatttattctttt 4725937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 27016727 - 27016678
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||||| ||||||||||||||  |||||||| ||||||| ||||    
T  27016727 ggaaattgaaatttttgacttttttatggaataatttcttcttttggaat 27016678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 142400 - 142436
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaat 161  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  142400 gtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 1031773 - 1031717
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||| | |||||||||||| ||| |||| || ||||||||| ||||||    
T  1031773 ggaaattgaaatactggacttttttatataatgatttcttattttagaatatttaaa 1031717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 12933381 - 12933345
Alignment:
Q  138 aaatatttgacttttttataaaataatttattctttt 174  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  12933381 aaatatttgactttcttataaaataatttattatttt 12933345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 43749526 - 43749580
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  43749526 aaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaa 43749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 38388760 - 38388712
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  38388760 aaatatttgacttttttataaattaatttcttcttttagaatctttaaa 38388712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 779733 - 779781
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  779733 aaatatttaactttttcataaaataatttattcttttagaatttttaaa 779781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 1680516 - 1680564
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  1680516 aaatatttgacttttttataaattaatttattctttttgaatccttaaa 1680564  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 4033090 - 4033030
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    ||||||||| ||||| ||||| |||||||||||||||||| || |||||||||| ||||||    
T  4033090 atcggaaatcgaaatctttgatttttttataaaataatttctttttttagaatccttaaaa 4033030  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 18399206 - 18399266
Alignment:
Q  127 atcggaaattgaaatatttgacttttttat-aaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| |||||||||||||||||||| ||||| |||| ||||||| ||||| |||||    
T  18399206 atcggaaatcgaaatatttgacttttttataaaaattatttcttcttttggaatccttaaa 18399266  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 38704997 - 38705049
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||  ||||||||||| ||||||||||||||||| ||||||| ||||    
T  38704997 atcggaaatcaaaatatttgacatttttataaaataattttttctttttgaat 38705049  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 53433233 - 53433281
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattctttta 175  Q
    |||| ||||| |||||||||||||||||||| |||||||| ||||||||    
T  53433233 atcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 54912049 - 54912097
Alignment:
Q  131 gaaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||| ||||    
T  54912049 gaaattgaaatatttaactttgttataaaatagtttattcttttggaat 54912097  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 17753602 - 17753665
Alignment:
Q  125 gtatcggaaattgaaatatttga-cttttttataaaataa-tttattcttttagaatctttaaa 186  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||||| ||||| ||||||||||    
T  17753602 gtattggaaattgaaatatttgatgttttttataaaataattttatttttttaaaatctttaaa 17753665  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 19054922 - 19054985
Alignment:
Q  125 gtatcggaaattgaaatatttga-cttttttataaaataa-tttattcttttagaatctttaaa 186  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||||| ||||| ||||||||||    
T  19054922 gtattggaaattgaaatatttgatgttttttataaaataattttatttttttaaaatctttaaa 19054985  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 30464009 - 30464056
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaat 179  Q
    |||||||||| ||||||||||||||| |||||||| ||||||| ||||    
T  30464009 aaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 11404760 - 11404718
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||    
T  11404760 aaattaaaatatttaacttttttataaaataatttattttttt 11404718  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 19898154 - 19898191
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttatt 169  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  19898154 aaattgaaatatttgatttttatataaaataatttatt 19898191  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 34758978 - 34758929
Alignment:
Q  137 gaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||| |||||||||||||||||||  ||||||| ||||| |||||    
T  34758978 gaaatatttcacttttttataaaataattacttctttttgaatccttaaa 34758929  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 37775370 - 37775411
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttt 173  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  37775370 aaatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 2831601 - 2831537
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa-agtgtctca 195  Q
    |||||||||||||||||||| ||| |||||||||| ||  ||| ||||| ||||| |||||||||    
T  2831601 aaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctca 2831537  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 25548249 - 25548305
Alignment:
Q  131 gaaattgaaatatttgactttt-ttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||||||||||| |||||| |||||||||| ||| |||||||||| || |||||    
T  25548249 gaaattgaaatatttaactttttttataaaatattttcttcttttagagtccttaaa 25548305  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 16442128 - 16442080
Alignment:
Q  138 aaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  16442128 aaatgtttgacttttttataaactaatttattcttttagaatctttaaa 16442080  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 7465536 - 7465476
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaaa 187  Q
    ||||||||||||||||||||||||||||||  || ||||| |||||| |||||| ||||||    
T  7465536 atcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaa 7465476  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 12307879 - 12307837
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataatttattctttt 174  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  12307879 aaattaaaatatttgacttttttataaaataatttcttctttt 12307837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 6048320 - 6048376
Alignment:
Q  130 ggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||| |||| ||| ||||||||||||| |||||| |||||||||||| ||||||    
T  6048320 ggaaattaaaatgtttcacttttttataaattaatttcttcttttagaatttttaaa 6048376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 8176385 - 8176326
Alignment:
Q  127 atcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    |||| |||||||||| ||||||||||||| ||| | |||| ||||||||||||| |||||    
T  8176385 atcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaa 8176326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 24616326 - 24616292
Alignment:
Q  132 aaattgaaatatttgacttttttataaaataattt 166  Q
    ||||||||||||||||| |||||||||||||||||    
T  24616326 aaattgaaatatttgacatttttataaaataattt 24616292  T

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Target: scaffold0246 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 18154 - 18215
Alignment:
Q  125 gtatcggaaattgaaatatttgacttttttataaaataatttattcttttagaatctttaaa 186  Q
    ||||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||| |||||    
T  18154 gtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaa 18215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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