View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_87 (Length: 326)
Name: NF11278_high_87
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_87 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 7988315 - 7988618
Alignment:
| Q |
11 |
cagagataatttgtgcaaagagtcacggttcgaatcccgaattctccacttctccatacataatatgtgtgaatattataattttaatggatatacattt |
110 |
Q |
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||||||||||||||| |||| || | |||| ||||||||||||| ||||||| | | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7988315 |
cagagataatttgtgtaaagggttagggtttgaatcccgaattccttacttctctacagataatgtgtgtgaatattataattttaatggatatacattt |
7988414 |
T |
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| Q |
111 |
aattttagttgttctctcgaataggattaactttcatctttcattgaagatacttatat---aatctaaaaaataaataaatggagcttcgaggaaagaa |
207 |
Q |
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| T |
7988415 |
tattttagttgttctctcgaataggattaactttcatctttcattgaggatacttatataaaaatcttaaaaataaataaatggagcttcgaggaaagaa |
7988514 |
T |
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| Q |
208 |
gaagttctctattgccaatatagaaatggagaaatcccaccgtaaacagtaaaaggttataaaggtggtttttagtgtagaagtgtcttctgagatttgt |
307 |
Q |
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| T |
7988515 |
gaagttctctattgccaatatagaaatggagaaattctaccttaaacagtaaaaagt--taaaggtgacttttagtgtagaagtgtcgtctaagatatgt |
7988612 |
T |
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| Q |
308 |
tggatt |
313 |
Q |
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|||||| |
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| T |
7988613 |
tggatt |
7988618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 30327707 - 30327754
Alignment:
| Q |
37 |
ggttcgaatcccgaattctccacttctccatacataatatgtgtgaat |
84 |
Q |
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| T |
30327707 |
ggttcgaaccccgaattcgccacttctccacacataatatgtgtgaat |
30327754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 29045820 - 29045864
Alignment:
| Q |
40 |
tcgaatcccgaattctccacttctccatacataatatgtgtgaat |
84 |
Q |
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| T |
29045820 |
tcgaatcccggattccccacttctccatacataatgtgtgtgaat |
29045864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 21023740 - 21023695
Alignment:
| Q |
39 |
ttcgaatcccgaattctccacttctccatacataatatgtgtgaat |
84 |
Q |
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| T |
21023740 |
ttcgaaccccggattctccacttctccacacataatgtgtgtgaat |
21023695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 28300139 - 28300186
Alignment:
| Q |
37 |
ggttcgaatcccgaattctccacttctccatacataatatgtgtgaat |
84 |
Q |
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| T |
28300139 |
ggttcgaaccccggattccccacttctccatacataatgtgtgtgaat |
28300186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 13350807 - 13350856
Alignment:
| Q |
37 |
ggttcgaatcccgaattctccacttctccatacataatatgtgtgaatat |
86 |
Q |
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| T |
13350807 |
ggttcgaactccgaattttccacttctccacacataatatttgtgaatat |
13350856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 7266 - 7234
Alignment:
| Q |
48 |
cgaattctccacttctccatacataatatgtgt |
80 |
Q |
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| T |
7266 |
cgaattctccacttctctatacataatatgtgt |
7234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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