View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_89 (Length: 323)
Name: NF11278_high_89
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_89 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 43841183 - 43841488
Alignment:
| Q |
1 |
ggttcattagacaaacttcgttggtaaataaatccattactttatttagagattggaagggtagttaccatctgacatcttggtttggagtagtaggtgg |
100 |
Q |
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| T |
43841183 |
ggttcattagacaaacttcgttggtaaataaatccattaatttatttagagattggaagggtagttaccatctgacatcttggtttggagtagtaggtgg |
43841282 |
T |
|
| Q |
101 |
tatcgttttaataacttcaattctttgtgtttggcagcattaagtgctacctgcaaaatacatgtagagaactgggaagtcagtcaccctctcacactgc |
200 |
Q |
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| T |
43841283 |
tatcgttttaataacttcaattctttgtgtttggcagcattaagtgctacctgcaaaatacatgtagagaactgggaagtcagtcaccctctcacactgc |
43841382 |
T |
|
| Q |
201 |
actacactcattttaaatttaaatctttcaaatatattatagattctagcggtccaatatcgtaacctgctactctttataattcaaaatataatgtgac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43841383 |
actacactcattttaaatttaaatctttcaaatatatcatagattctagcggtccaatatcgtaacctgctactctttataattcaaaatataatgtgac |
43841482 |
T |
|
| Q |
301 |
aaaacc |
306 |
Q |
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|||||| |
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| T |
43841483 |
aaaacc |
43841488 |
T |
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