View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_high_92 (Length: 304)
Name: NF11278_high_92
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_high_92 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 38768013 - 38768294
Alignment:
| Q |
18 |
atattaaggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggcaatgttggtgttgtaactgt |
117 |
Q |
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| T |
38768013 |
atattaaggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggtaatgttggtgttgtaactgt |
38768112 |
T |
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| Q |
118 |
attcaatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtcagaggcaaaagtgttttc |
217 |
Q |
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| T |
38768113 |
attcaatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactccgccatgtggagagatatgtgtcagaggcaaaagtgttttc |
38768212 |
T |
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| Q |
218 |
actggttaccataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctctgcttct |
299 |
Q |
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| T |
38768213 |
actggttaccataagaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctcttcttct |
38768294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 44996228 - 44995964
Alignment:
| Q |
25 |
ggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggcaatgttggtgttgtaactgtattcaat |
124 |
Q |
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|||||||| ||||||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||| || | |||||| |||| || ||| ||| |
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| T |
44996228 |
ggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaac |
44996129 |
T |
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| Q |
125 |
gaattgcggctggaggaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtcagaggcaaaagtgttttcactggtt |
224 |
Q |
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| T |
44996128 |
gaaatacaactagaagaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggct |
44996029 |
T |
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| Q |
225 |
accataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaatt |
289 |
Q |
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|||| ||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
44996028 |
accacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggttgaatt |
44995964 |
T |
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